Gene Vapar_0349 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_0349 
Symbol 
ID7973493 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand- 
Start bp376066 
End bp376779 
Gene Length714 bp 
Protein Length237 aa 
Translation table11 
GC content65% 
IMG OID644790952 
Producttranscriptional regulator, TetR family 
Protein accessionYP_002942278 
Protein GI239813368 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCCAAGA AGGCGCCACG CCGCACAGCG CAACGCATCC TCGAAGCCGC ACTCGAGCTG 
TTCAACCGCT TCGGCGAGCC GAACGTCTCC ACCACGCTGG TGGCGGGCGA GCTCAACATC 
AGCCCCGGCA ACCTCTACTA CCACTACCCC GCCAAGGAAG AGCTGATCAA CAAGCTCTAC 
GAAGGCTACG AGGCCGAGCT CAACGAGCTG CTGCATGCCA GCGAAGGCGT GCACGATGTG 
GAAGACGCCT GGTTCTTCAT GCACAGCCTG TTCGAGCTGA TCTGGCGCTA TCGCTTCCTC 
TACCGCGACC TGAACGACCT GCTGAGCAAG AACCGGCACC TGGAAACGCA GTTCCAGCTG 
GTGCTCAAGA ACAAGACCCG CGCGATCCGC ATGCTGATCG CCGGGCTCAG CCGGGCCGGT 
CACCTGGACA TCGACGTGCA CGAGGTCGAC ACCCTCGCCC AGAGCATGGT GGTGGTGCTG 
ACCTACTGGC TCAGCTACGA GTACGTGCGC AATCCGCGCG AGGCGCTCGA GCCGGCGCAT 
GCCCAGGGCG CGCTGATGCG CGGCGGCCAG CACACGCTGC ACCTGCTCGC GCCGTATCTC 
GGAGGCGAGC AGCGGCGGCA TTTGCTGACA CTGAGCAACG CCTACAGCGG CGATGATTCC 
GCAAGCGCGC GGCCTGCGCA GGCCAGCGCC GATTTGGCAG CCGAGGCCCG CTAA
 
Protein sequence
MAKKAPRRTA QRILEAALEL FNRFGEPNVS TTLVAGELNI SPGNLYYHYP AKEELINKLY 
EGYEAELNEL LHASEGVHDV EDAWFFMHSL FELIWRYRFL YRDLNDLLSK NRHLETQFQL 
VLKNKTRAIR MLIAGLSRAG HLDIDVHEVD TLAQSMVVVL TYWLSYEYVR NPREALEPAH 
AQGALMRGGQ HTLHLLAPYL GGEQRRHLLT LSNAYSGDDS ASARPAQASA DLAAEAR