| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0339 |
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| Symbol | |
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| ID | 7973483 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 364732 |
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| End bp | 365469 |
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| Gene Length | 738 bp |
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| Protein Length | 245 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644790942 |
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| Product | short chain dehydrogenase |
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| Protein accession | YP_002942268 |
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| Protein GI | 239813358 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACAACAA CTTTCGATTT TTCAGGCCAG CGCGCACTGG TCACCGGCGC AAGCAGCGGC
ATCGGCCGTG CAGTCGCCGT GCGGCTCGCG CAATCAGGCG CAGCCGTGAC CGCCGTGGGC
CGCAACGCCG CCGCGCTCGA CACACTGCAC GCAGAAGCCG GCTGCACCCC ATTGACCGTC
GACGTGGCCA ACCCAGCCGA ACTGGAACGG GCACTCGCAG CACTGCCAGC CTTCGACCTC
GTCGTGAACT GCGCCGGCAT CGCACTGCTC GAACCGGCGC TCGACGTCCA GGCCGAGAGC
TTCGACGCCG TGATGGCCGT CAACGCGCGC GCAGCAGCCC TGGTCGCCTC GCGCTGCGCC
AAGGCGATGA TCGCGGCCGG CGTGCGCGGC AGCATCGTCA ATGTGTCGAG CCAGGCGGCA
CTGGTCGCGC TCGATGCGCA TCTTTGCTAT TGCGCATCCA AGGCCGCCAT GGACGCCATC
ACGCGCTCGC TGTGTCTTGA ACTCGGACCG CACGGCATCC GCGTCAACAG CGTGAACCCC
ACCGTCACGC TCACGCCCAT GGCCGAGCAG GCCTGGGCCG ATCCGGCCAA GAGCGCGGCG
GCGCTCCGGA ACATTCCGCT GGGACGCTTC GCGCAGGTCG ACGAAGTGGT GGCGCCGATC
CTGTTCCTGC TCTCCGATGG CGCCTCGATG GTCAGCGGCG CGGCGCTGCC GGTGGACGGC
GGCTACACCA TCGTGTGA
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| Protein sequence | MTTTFDFSGQ RALVTGASSG IGRAVAVRLA QSGAAVTAVG RNAAALDTLH AEAGCTPLTV
DVANPAELER ALAALPAFDL VVNCAGIALL EPALDVQAES FDAVMAVNAR AAALVASRCA
KAMIAAGVRG SIVNVSSQAA LVALDAHLCY CASKAAMDAI TRSLCLELGP HGIRVNSVNP
TVTLTPMAEQ AWADPAKSAA ALRNIPLGRF AQVDEVVAPI LFLLSDGASM VSGAALPVDG
GYTIV
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