| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0329 |
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| Symbol | |
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| ID | 7973473 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 352158 |
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| End bp | 353819 |
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| Gene Length | 1662 bp |
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| Protein Length | 553 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644790932 |
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| Product | SMP-30/Gluconolaconase/LRE domain protein |
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| Protein accession | YP_002942258 |
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| Protein GI | 239813348 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3386] Gluconolactonase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCCTGCC GCCCGTTCAT CCGCGCCGCC GCACTCATCG CCATCCTCGC CCTGCTGGCC
GCCTGCGCCG GCATCGCGCC GACGCCGTCG CCACCGCCCA CCCGCCCCGC CGCGTGGTCC
GAGCCCGAAG TGCTGGTCGC GCCGTCCTCG TTCGCGGGCG TGCACGGCCT GGCCATCGAC
CAGAAGGGCC GCCTGCTCGC GGGCTCGGTG CTCGGCAACA CGCTGTGGGA GGTCGACCGC
AGCACCGGCG CGGCCAAGAT CCTGATCGAT GCGCCCGAGG GCCAGGCCGA CGACATCGCG
GTCGGCCCCC GGGGCGAGCT GGCATGGACC AACTACCTCA TGGGCATGCT GCGCTACCGC
GAAAGCGACG GCGCACCGAT GCGCGTGCTC GCCAAGGACC TGCCCGGCCT CAACTCGCTG
GACTTCGACC GCAGCAGCGG CAAGCTCTAC GCCTCGCAGG TGTTCCTGGG CGACGCGCTC
TGGGAAATCG ACCGCATGGG CCAGAAGCCG CCGCGGCTCA TCAAGAAGGA CATGGGCGGC
TTCAATGGCT TCGAGGTCGG CCCCGACGGC ATGCTCTACG GACCGCTGTG GTTCAAGGGC
CAGGTGGTGA AGATCGATCC GGCCGACGGC GCCATGACCG TGATCGCCGG CGGCTTCAAG
ATTCCCGCGG CCGCCAACCT CGACGGCAAG GGCAACCTCT GGGTGGTCGA TGCGCGCAGC
GGCGAGCTGG TCAAGGTGGA CCTTGCCACG GGCCGCAAGA CCGTCGCGAA GCAGCTGCGC
CCGTCGCTCG ACAACCTGGC CATCGCCCCC GACGGCACGA TCTACGTGTC GAACATGGCC
AACAACGAAG TGCAGTCCTT CGACCCCGCC ACCGGGGTGC TGCGCACGCT CACCAGCGGC
AAGCTCGCGA CGCCCGCGGG GCTCAAGATC GAAGGCCGCA CGCTCTGGGT GGCCGATGTG
TTCGGCTTCC GGCAGGTGGA CGTGCGCACG GGCGAAGTGC GCGACGTGTT CCGCATGCAG
CGCGATCCGG AGCTCGACTA TCCGTTCGCC GTCGGCCTGT CGGGCACGCG CTTCGCGCTG
ACCTCGTGGT TCACGGGCAC CGTGCAGCTG GTGGACCGCC AGACGCTGCG AACCGTCGAA
ATCATCCACG GCCTGAAGGC GCCGTTCGAT GCCATTCCCA TGGCCGACGG CAGTGTGATC
TATGCCGAGA TTGCCACCGG CAGCATCACC CGCGCGAGCG GCCCTCATTT TGCCGATAAG
CAAGTGCTCG CCAGCGGGCT GGGCGGCCCG GTGCAGATGA TCGTCGGCCG TGACGGCGCG
CTCTACGTCA CCGAAGCCGC AGGCAAGCTG ACCCGCATCC CGCTCGATGC CAGCGCCCCG
CTGCGTGCGA TTGCCGAAGG CCTGGCGCTG CCCGAAGGCG TGGCCGAGAC GCCCTGGGGC
AGCTTCATCG TGGCCGAGAG CGCGGCGCGC CGGCTGGTGG AGATCGACCC GGCCAATGGC
TCGCGCCGCA CCGTGGCGGA AAACCTGCCG ATCGGGCTGG CCGCGGGACC GGGCCTGCCG
CCGCCCTACG TGGTCACGGG CGTCGCGGTC GGCAGCGACG GGAGCATCTA CATGGCGGCC
GACCGGAACA ACGCGATCTA CCGGATTCGC CCGAAAAATT GA
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| Protein sequence | MPCRPFIRAA ALIAILALLA ACAGIAPTPS PPPTRPAAWS EPEVLVAPSS FAGVHGLAID
QKGRLLAGSV LGNTLWEVDR STGAAKILID APEGQADDIA VGPRGELAWT NYLMGMLRYR
ESDGAPMRVL AKDLPGLNSL DFDRSSGKLY ASQVFLGDAL WEIDRMGQKP PRLIKKDMGG
FNGFEVGPDG MLYGPLWFKG QVVKIDPADG AMTVIAGGFK IPAAANLDGK GNLWVVDARS
GELVKVDLAT GRKTVAKQLR PSLDNLAIAP DGTIYVSNMA NNEVQSFDPA TGVLRTLTSG
KLATPAGLKI EGRTLWVADV FGFRQVDVRT GEVRDVFRMQ RDPELDYPFA VGLSGTRFAL
TSWFTGTVQL VDRQTLRTVE IIHGLKAPFD AIPMADGSVI YAEIATGSIT RASGPHFADK
QVLASGLGGP VQMIVGRDGA LYVTEAAGKL TRIPLDASAP LRAIAEGLAL PEGVAETPWG
SFIVAESAAR RLVEIDPANG SRRTVAENLP IGLAAGPGLP PPYVVTGVAV GSDGSIYMAA
DRNNAIYRIR PKN
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