Gene Vapar_0319 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_0319 
Symbol 
ID7972668 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp342070 
End bp342483 
Gene Length414 bp 
Protein Length137 aa 
Translation table11 
GC content69% 
IMG OID644790922 
ProductRNP-1 like RNA-binding protein 
Protein accessionYP_002942248 
Protein GI239813338 
COG category[R] General function prediction only 
COG ID[COG0724] RNA-binding proteins (RRM domain) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGGCAAGA AACTCTACGT AGGCAACCTC GCCTACTCTG TGCGTGACAA CGACCTGGAA 
CAGGCTTTCG GCGAGTTCGG CTCGATCGTC AGCGCCAAGG TCATGATGGA ACGCGACACC
GGCCGCTCCA AGGGCTTCGG TTTCGTGGAA ATGGGCACCG ACGCTGAAGC GCTGGCTGCC
GTCGAAGCCA TGAACGGCCA TTCGCTCCAG GGCCGCGCCC TGACCGTGAA CGAAGCACGT
CCGATGGAAG CTCGTCCCCC CCGTACCGGT GGTGGCGGCG GCTACGGCGG CGGCGGCGGT
GGTGGTTACG GCGGTGGTGG TGGCGGCGGC GGCTACGGTG GTGGCGGCGG TGGCCGCAGC
GGTGGTGGCG GCGGCTACGG CGGCGGCGGC GGCGGTGGTC GCGGCGGCTA CTAA
 
Protein sequence
MGKKLYVGNL AYSVRDNDLE QAFGEFGSIV SAKVMMERDT GRSKGFGFVE MGTDAEALAA 
VEAMNGHSLQ GRALTVNEAR PMEARPPRTG GGGGYGGGGG GGYGGGGGGG GYGGGGGGRS
GGGGGYGGGG GGGRGGY