| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0299 |
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| Symbol | |
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| ID | 7972648 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 319355 |
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| End bp | 320521 |
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| Gene Length | 1167 bp |
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| Protein Length | 388 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644790902 |
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| Product | protein of unknown function DUF140 |
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| Protein accession | YP_002942228 |
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| Protein GI | 239813318 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG0767] ABC-type transport system involved in resistance to organic solvents, permease component |
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| TIGRFAM ID | [TIGR00056] conserved hypothetical integral membrane protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.675312 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCCCTAG CAACCCCGCC TGCCGACGCA CCCGCCGCCG ACAGCGTGTT GCCCCGCATC
GACGAGCGCG AGCAGGACGG CCGCAGCTGG ACCGTCGCCA GTGGCCGGTG GACCACGCTG
GCCATGTCGT CGCGCAGCGC GTGGCAGGCG CTTTCCAAGG ACTTGGCCGG CGCGCCCCCC
GCCGACGGCC GCGCCTGGGA CCTGCGCCCG ATCGAACAGC TCGACCACAT CGGCGCGCAG
CTGCTGTGGG ACCACTGGCG CCACCGCTGG CCGGCCACGC TGGAGCTGTC GCCGCAGCAC
AAGGCGGTGC TCGACCAGGT GGCGCAGTTC ACCGTGGGCA CGCCCGAGGA GCCGCCGCCC
ACGCTGGCCG AGCGGCTGCG GCATTTCTCG CACACCGGTG CGCGCGGGCT GGAGGTGGCG
CGCGACTTCG TGGGGCTGAT CGGCCAGCTC GCGCTCGACG CCTGCACGCT GCTGCGGGCG
CCGCACCGCG GGCCGTGGCG CGATTTCTCG GGGCATCTTT ACCAGTTCGG CGCCACCGCG
CTGCACATCA CGGCGCTGGT GGGCCTGTTG ATCGGCGTGG TGCTGGCCTA CCTGATCTCG
CAGCAGCTGC GCCAGTACGG CGCCGAGGCC TTCGTGGTCA ACATCCTCGG GCTGTCGCTG
ATCCGCGAGC TCGGGCCGGT GCTGGCCGCG GTGCTGATCG CGGGCCGTTC GGGCTCGGCC
ATCACGGCGC AGATCGGCGT GATGCGCGTG ACCGAGGAGC TCGACGCGAT GCGCGTGATG
GGCATTCCGC ACGGCTTCCG GCTGGTGATG CCGCGCGTGA TGGCGCTGGC CATCGCAATG
CCGCTGATCA GCCTCTGGAC CTCGATGGCG GCGCTCCTGG GCGGCATGCT CGCAGCCGAC
GCCGCGCTCG ACATTTCGCC GGCCTACTTT CTCTCGGCAC TGCCGCGCGC GGTGCCGATC
TCGAACCTCT GGCTCGCGCT CGCGAAGTCG GCGGTGTTCG GCATTTTGAT TGCGCTGATC
GGCTGCTACT TCGGCATGAA GGTCAAGCCC AACACCGAGA GCCTGGGCCG CGGCACCACC
TCGTCGGTGG TGACCTCGAT CACCGCGGTG ATCCTGGTCG ACGCGCTGTT CGCGGTGCTG
TTCAAGGGCG TGGGGTTCCG GGCATGA
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| Protein sequence | MSLATPPADA PAADSVLPRI DEREQDGRSW TVASGRWTTL AMSSRSAWQA LSKDLAGAPP
ADGRAWDLRP IEQLDHIGAQ LLWDHWRHRW PATLELSPQH KAVLDQVAQF TVGTPEEPPP
TLAERLRHFS HTGARGLEVA RDFVGLIGQL ALDACTLLRA PHRGPWRDFS GHLYQFGATA
LHITALVGLL IGVVLAYLIS QQLRQYGAEA FVVNILGLSL IRELGPVLAA VLIAGRSGSA
ITAQIGVMRV TEELDAMRVM GIPHGFRLVM PRVMALAIAM PLISLWTSMA ALLGGMLAAD
AALDISPAYF LSALPRAVPI SNLWLALAKS AVFGILIALI GCYFGMKVKP NTESLGRGTT
SSVVTSITAV ILVDALFAVL FKGVGFRA
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