| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0214 |
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| Symbol | |
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| ID | 7971423 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 228631 |
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| End bp | 229356 |
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| Gene Length | 726 bp |
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| Protein Length | 241 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644790817 |
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| Product | type VI secretion-associated protein, BMA_A0400 family |
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| Protein accession | YP_002942143 |
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| Protein GI | 239813233 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3913] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03373] type VI secretion-associated protein, BMA_A0400 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.282429 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAACAGCG GCATTCCTTC GCCGCGGGTG TGGGTGCCCG ACGACGAGCA GATCGGCTGG
TACGGCAAGC TGCCCGCGGC CGGCGACTTT CTCTATCGCC GCGTGCCGCG CGAGCTCCAG
GCCTGGTGGG ACCGCTGGAT GCAGAACGGC CTGGGCACCT TCAAGCGCTG GCCCGACGCC
ATGACGCGGC ACTACGTGGT GGCGCCGGTC TGGAACTTCG CGATTCCGGC CACGCAGGGC
GTGGACGCGG TGCAGTTCGG CTGCCTGGCG CCCAGCTGCG ACCGCGTGGG GCGCTACTAC
CCCGTGTGCG TGACGCTGCA GGTGGCCGCC TCGAGCTACC GGCCCTCCAT GCTCGAGGGC
TCGGCCGCGT GGTACTGGCA ATGCGGCACC GCGCTGCTGC AGGCGATCCG CCACAGCGTG
GCGCCCGACC AGTTCGACCG CCAGGTGCTG GCCGCGGCCC ACGGCGGCTT CCAGACCGCG
AGCGGCGGCT CGGACGACAT CCTTTCGATC CTCGGGCCCG CGGCTGGCGG CGCCGGCGCC
ACAGGCGCGC AGCAGCGCCT CGGCTGGCCC GAGCTGCCGC TGTGCTTCGA TGCCTTCGGA
AGCACCAGCT ACTGGTGGAC CAACCAGGCG GACGGCTCGC CGCTGCGCAC CGCCGCCCAC
GGCGGAGGCC TCAACACGCC GTTGTTCTCG AAGTTGTTTT CACAGGGGCA TGTGCCATGG
GCATGA
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| Protein sequence | MNSGIPSPRV WVPDDEQIGW YGKLPAAGDF LYRRVPRELQ AWWDRWMQNG LGTFKRWPDA
MTRHYVVAPV WNFAIPATQG VDAVQFGCLA PSCDRVGRYY PVCVTLQVAA SSYRPSMLEG
SAAWYWQCGT ALLQAIRHSV APDQFDRQVL AAAHGGFQTA SGGSDDILSI LGPAAGGAGA
TGAQQRLGWP ELPLCFDAFG STSYWWTNQA DGSPLRTAAH GGGLNTPLFS KLFSQGHVPW
A
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