| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0212 |
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| Symbol | |
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| ID | 7971421 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 223612 |
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| End bp | 224994 |
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| Gene Length | 1383 bp |
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| Protein Length | 460 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644790815 |
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| Product | hypothetical protein |
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| Protein accession | YP_002942141 |
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| Protein GI | 239813231 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3455] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03349] type IV / VI secretion system protein, DotU family
[TIGR03350] type VI secretion system OmpA/MotB family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.468684 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACGGTG TCAACGACAT GGCCGTCGGT CCGGGAGGCT TCGTGCCGCC CAACCCGGGC
GGCGGCGCCA ACAACAACGG CGGCAACGGC GATGCGGCGG GCATGCCGCC GGCATCGCGC
GGCGCGGGGC AGCAGCAACC GCAGTCATTC ACCGCCTGGC ATGACGCACG CCGTCCGCAT
GCGGGCGACA CGGCGCTGGC CGGCAACAAC CCGCTCGTCG CGGCGGCCAA CCCGCTGCTC
GACCTGATCC CGCAGATCCG CGCCACCGGC CACCACGATG CGCCCGCGCA ATTGCGCGAG
CACCTGGTCG ACGAGGTCCG GCGCTTCGAG ACGCGCGCGC AGCAAAGCGG CATTGCGCCC
GAAGTGATCA TCGGCGCGCG CTACTGCCTG TGCACCGCGG TCGACGAAGC GGCCGCGCTC
ACGCCCTGGG GCGGCAGCAT CTGGTCGTCG CAGAGCCTGC TCGTGATGTT CCACAACGAG
ACCTGGGGCG GCGAGAAATT CTTCCAGCTG CTGTCGCGGC TGGTGCAGAA CCCGCAGCAG
CACCTGCAGC TGATCGAGCT CATCTACTTC TGCCTGGCGA TGGGCTTCGA AGGGCGCTTC
CGCGTCATCG ACAACGGCCG CACGCAGCTC GAAACGCTCA AGCAGCGGCT GCTGCAGATC
ATTCGCCAGA CGCGCGGCGA AATTGCCGTG CCGCTGTCGC CGCACTGGCA GGATGCGAGC
GCGCCGGTGC GCCGCACGCG CAACTGGGTG CCGCTGTGGG CCGTGGGCGC GGTGGCGGCG
GTGCTGCTGG TGCTGGTGTT CGGCGTGCTC ACCTTCAGCC TGGCGGGCCG TTCCGACGGC
GCATTCGCCG CGGTCAATGC GGTGCGCCTG CCGCAGACGC AGCGTGCCGT GGCCGTTGCG
CCGGCACCGC AGCCGCGGCT GCAGCGCTTT CTCGAACCCG AGATCCGCGA CGGCCTGCTG
ACGGTGCGCG ACGAGGCCGA CCGCAGCGTG GTGGTGCTGC GCGGCGACGG CCTGTTCGCA
TCGGGCTCCG ACCGCGTGCT CGACCGCTAT GCGCCCGTGC TCGCGCGCGT GGCCGATGCG
CTCAACTCGG TGGAGGGCAA CGTGCTCGTC AGCGGCTTCA GCGACGACCA GCCGATCCGC
AGCGTGCGCT TTCCGTCCAA CTGGCAGCTC TCGCAGGCGC GTGCCGATGC GGTCAAGAAG
ATGATCGCCA CGCGCGTCAC GCGGCCCGAG CGCCTGCGCG CCGAAGGCCG CGGCGATGCC
GATCCGCTGG TGCCTAATGA TTCGCCGGCC AACCGTGCGC GCAACCGGCG GGTCGAAGTG
ACGCTGCTGG TGGCACCCGT GGCCGCAGGC GCCGCTCCTG CACCGCAGGG AGGAACCCGC
TGA
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| Protein sequence | MNGVNDMAVG PGGFVPPNPG GGANNNGGNG DAAGMPPASR GAGQQQPQSF TAWHDARRPH
AGDTALAGNN PLVAAANPLL DLIPQIRATG HHDAPAQLRE HLVDEVRRFE TRAQQSGIAP
EVIIGARYCL CTAVDEAAAL TPWGGSIWSS QSLLVMFHNE TWGGEKFFQL LSRLVQNPQQ
HLQLIELIYF CLAMGFEGRF RVIDNGRTQL ETLKQRLLQI IRQTRGEIAV PLSPHWQDAS
APVRRTRNWV PLWAVGAVAA VLLVLVFGVL TFSLAGRSDG AFAAVNAVRL PQTQRAVAVA
PAPQPRLQRF LEPEIRDGLL TVRDEADRSV VVLRGDGLFA SGSDRVLDRY APVLARVADA
LNSVEGNVLV SGFSDDQPIR SVRFPSNWQL SQARADAVKK MIATRVTRPE RLRAEGRGDA
DPLVPNDSPA NRARNRRVEV TLLVAPVAAG AAPAPQGGTR
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