| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0210 |
|---|
| Symbol | |
|---|
| ID | 7971419 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 221594 |
|---|
| End bp | 222064 |
|---|
| Gene Length | 471 bp |
|---|
| Protein Length | 156 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 644790813 |
|---|
| Product | type VI secretion lipoprotein, VC_A0113 family |
|---|
| Protein accession | YP_002942139 |
|---|
| Protein GI | 239813229 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3521] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR03352] type VI secretion lipoprotein, VC_A0113 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.154927 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGCTGGGTG GCCTCAGTGG ATGCGCATCG ACTGCGAAGT CATTGCCCAC GCCCTATGCC
GTGACGATCA AGATCGACGA TGGCGTCAAC CCCGACGGAC GCGGCCAGCC GGCACCGATT
CTCGTCAAGG TCTTCGAATT GAAATCTTCC GGTAACTTCG AGACGGCAGA CTACTTTGCA
CTACAGGACC GCGACCGCGA AACGCTTGCA GCGGAACTCG TGAACGCCGA CCAGGCCATC
ATGCGCAGCG GTGAAGAGCG TGTGTTCAAG CGCGAGGCAG GGCTCGACTC GCGTGCCATC
GGCATCATCG CCGGCTACCG CAAGCTCGAG GCCGCACGCT GGCGCATCGT GCTGCCGCTC
AAGGAGCCGA AGCAAACCAA TCTCTACAAG GTGTGGCAGT TTTCTCCGAG CGAGCAAAAC
GTGCGCATCG CGATCCGCAA GAGCGGCATC GAGTTACTAC CAAGTCGTTA A
|
|---|
| Protein sequence | MLGGLSGCAS TAKSLPTPYA VTIKIDDGVN PDGRGQPAPI LVKVFELKSS GNFETADYFA
LQDRDRETLA AELVNADQAI MRSGEERVFK REAGLDSRAI GIIAGYRKLE AARWRIVLPL
KEPKQTNLYK VWQFSPSEQN VRIAIRKSGI ELLPSR
|
|---|
| |