| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0203 |
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| Symbol | |
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| ID | 7971412 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 213347 |
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| End bp | 216007 |
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| Gene Length | 2661 bp |
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| Protein Length | 886 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 644790806 |
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| Product | pentapeptide repeat protein |
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| Protein accession | YP_002942132 |
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| Protein GI | 239813222 |
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| COG category | [S] Function unknown |
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| COG ID | [COG1357] Uncharacterized low-complexity proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.713128 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAACCA TCAAGCCCCT GCGCCTGAGC ATCCTGACGC GCCCCTACCT GAGGAACGGC
GCCCAGTATC TGGCGATGAC CGCCATCGCA ATGACAAACC TGAAGGGTCA GCAGCAGCAG
CTTGTGCCGG AACCCGAGAT CTGGAAGACC CTGACCGATG AACTGGGCGG CGACACGGTG
TTTGATCTCG GCATGCCCAA GGACAATGCC GAATTCATCG TATCGGGCTT TGCGCACACG
GCGCACCAGC CGGACAAGTC TCGCTGTGCA GTGAGCGTGC AAGTCGGGGC GCGCAAGAAA
ACGCTCCTGG TGTTCGGCGA CCGATTCTGG ATCGACGGCC GGGCGACCGC GCCCCAGCCA
TTCGATGCGA TCCGCCTTGA CTGGCGCAAG GCCTTCGGGG GCCCGGGATT CGCAGAAAAC
CCCCTGGGCA TCGGACATGA CGATGACATC GTCGAGGGGT TGAAAGTGCG GCGCGTGCCC
AACATCGAAC ACGCGAACGG ACTGCTGTGG CGGCCGGGCC AGGTGCCTGC ACCCGCAGGC
TTCGGCCCGA TCGATGTGGC AAGGCCTTCG CGGATGCGCA AGATGGGGCG CGACTACGAC
GAGCATTGGA AGCAGAACCT CTATCCCGGT TTCGCGAGGG ACATGGACTG GGGCTACTTC
AATGCAGCCT CCGAAGACCA GTGGCTGGCG CTGGGCGAAC GCGGCCTGGC CGGTGCCAGC
TACGAGATCC TGAACATGCA TCCGGAGGAT CCGGTGCAAC GCGGCCGCCT GCCCGACTGG
CAGGCGCGAG GGTTCATCGT CCGTGAAGCA AAGAACCGGC AACTGGCGTC GGGCATTTTT
GACGAAGTCT CGCTGCGGCT CACGACGGCC TGGTTTTTTC CCCATCGAGA GCAGGTCGCG
CTGGTGTACC ACGGCAGCAT CGGCATCGAG GAAGACGACG CATCCGACAT CAGCCACGTC
ATGGCTGCCA TGGAGGAAGG TGGGTCGGAA CGGCCTTTGG CTTCGTACCG CGATGTATTG
ATTCAGCGCT GCGATCCCGA GAACGGCGCA CTCTACGCAT TGCGCGACGA TCAATTGCTG
CCGCCGAACT CGATTGGGCA GTGGCTCGAG AACAGCCAGG AAGAAGACAG GGACGCCGAC
CCGCTCACCC GCAACATGAA AGTTCGCGCC GAACGTGCCC AAGCCAAACT GGCCGAAGCA
TTCAAGGCGA GCGGCGGAGA TCCGGCCAAG TTCGCCCTGC CGCCCCCGCC GATCACCACC
CCGCCCAAGC TGCATGAGAT CCCGGCCTAT GTGCAGAAGA TGAAAGCCAT GGTGCAGGAG
CAGCGGGAGA AGCTGGCGAA GGGGCGGGAG GCCATCGGCA AGGCCGCCGA TGCCAATGCG
GTCCAATCGA GAAAGCTTGG CTTCGATACC TCGACCTTTC TCGCGAAAGC AGAAGCGGCC
AAGGGCAAGG GGCCTCCGCG CTTCGACCCC CGGCCTTTCG TAGACGGAAT CTCGGGTGTT
TCTGCGGCGG TAGGCGCGCC GCCCGCGCCC CCGGAGAGCC TCGCGGAACT CAGGAGGGTG
ACGGCCGAGG CAAAAAGAGG ATTGCTCGCG AGCTATCGCA GCATGGCGCA GTACCAGGAC
GCGGCCGACG CCATGCCGCC CGACGAGTCC GACAGGGCGC GGGCCGAAAT CGAGCGCGTG
CTCGCGGGTT CGCGCGATTT CTCGGACATG GATCTGACCG GTGCCGACCT GTCGAACATG
GACCTTCACG GCACCCGATG GCATCGAGCA CTCCTCGAGG GCGTGGACTT CAGCAATAGC
AGGCTCGACG ATGCCGACTT CAGCGAAGCG GTGCTGGCGA GAGCGCGCCT GCATCGCACG
TCGATGCGCC GTGCGATTTT CGATCGTGCC AACATGGCAT TGGCACGATG CGAGGATGCG
GATTTCTCGG GTGCGCGCTT CATGAAGATG GTGCTCGACA AGATGGTTGC CAAGGGATGC
AATTTTTCTG ATGCGACCAT GGAGGAGCTG AATTTCATGA CCGTGCACCT GGAGAGGTGC
AGCTTCGAAC GTGCCGCCAT CTCCTATGCC CATGTGCTGG AGAAGTCCGT GATGCATGGC
GTGCGCTTCG ACCACGCACG GATTCACAAG ATGTCGTGGA TCGATTGCGA TGTCAACGAA
CTGAGCTTCG CGCACGCCGA GCTCGATTCA TGCGGATGGG TCAACACCGA TGGCGCAGGC
CGTCTCGATT TCTCGGCCGC ACACTTGACG ACCACCTGCT TCGTGGGAGA GAGCAGCTTG
AGGAAGGTCT GCTTTCGAGG CGCCATGCTG CGCGACTGCA GCCTGCGTGG TATTGCATTG
GACGAAGCGG ACTTTGCGAA TGCGCGGATC GAGAACAGCG ACTTCTCCGG GGCATCGATG
CATCGCACGA ACCTGGAGGG TGCCGACGCC AAGGGTGCGA TGTTCGTGCG TTCGGACCTG
ACCCGGGCGT CGCTGCTGGA TGCCGATCTC AGCGGCGCCA TCCTGCAGAA GGCGGTGCTC
GTGTCCACGG ACCTGCGTCG TGCCAACCTG TTCAGGGCGG ACCTGTCGCA ATGTCTCATC
GATGACAGAA CGCTTTTCGA CGGTGCCTAT GTCGAGCAGG TCAAGACAGT TCCCTTGCGC
AAGAAAGAGA AGGTGGAATG A
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| Protein sequence | MKTIKPLRLS ILTRPYLRNG AQYLAMTAIA MTNLKGQQQQ LVPEPEIWKT LTDELGGDTV
FDLGMPKDNA EFIVSGFAHT AHQPDKSRCA VSVQVGARKK TLLVFGDRFW IDGRATAPQP
FDAIRLDWRK AFGGPGFAEN PLGIGHDDDI VEGLKVRRVP NIEHANGLLW RPGQVPAPAG
FGPIDVARPS RMRKMGRDYD EHWKQNLYPG FARDMDWGYF NAASEDQWLA LGERGLAGAS
YEILNMHPED PVQRGRLPDW QARGFIVREA KNRQLASGIF DEVSLRLTTA WFFPHREQVA
LVYHGSIGIE EDDASDISHV MAAMEEGGSE RPLASYRDVL IQRCDPENGA LYALRDDQLL
PPNSIGQWLE NSQEEDRDAD PLTRNMKVRA ERAQAKLAEA FKASGGDPAK FALPPPPITT
PPKLHEIPAY VQKMKAMVQE QREKLAKGRE AIGKAADANA VQSRKLGFDT STFLAKAEAA
KGKGPPRFDP RPFVDGISGV SAAVGAPPAP PESLAELRRV TAEAKRGLLA SYRSMAQYQD
AADAMPPDES DRARAEIERV LAGSRDFSDM DLTGADLSNM DLHGTRWHRA LLEGVDFSNS
RLDDADFSEA VLARARLHRT SMRRAIFDRA NMALARCEDA DFSGARFMKM VLDKMVAKGC
NFSDATMEEL NFMTVHLERC SFERAAISYA HVLEKSVMHG VRFDHARIHK MSWIDCDVNE
LSFAHAELDS CGWVNTDGAG RLDFSAAHLT TTCFVGESSL RKVCFRGAML RDCSLRGIAL
DEADFANARI ENSDFSGASM HRTNLEGADA KGAMFVRSDL TRASLLDADL SGAILQKAVL
VSTDLRRANL FRADLSQCLI DDRTLFDGAY VEQVKTVPLR KKEKVE
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