| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0199 |
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| Symbol | |
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| ID | 7971408 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 206635 |
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| End bp | 207801 |
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| Gene Length | 1167 bp |
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| Protein Length | 388 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644790802 |
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| Product | type VI secretion protein, VC_A0111 family |
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| Protein accession | YP_002942128 |
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| Protein GI | 239813218 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3520] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03347] type VI secretion protein, VC_A0111 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCATGC GCACCACGGC CGAGCTCGCC GACGATTCGC AGCAGGCGCC GCCGGCTGCG
ATCGAGCATG CCGCGCCCGA GCATGCCGCG GCACCCGCGC GGCGCGGTGC GGCCGAAGCC
GATCCGGTCC TGTGGGCCGG CCTGGTCGAC CAGCCTTTCG AGCACGACCT GTTCATGCTG
CTGCGCCGCC TCGATGCGCA CGGCAGCCAT CCGCTGCTGG GCCGCGCGCC GCGCCCGCTC
GACGAGCCTT TGCGGCTGGG CCAGGAGCCG TCGATGGCCT TTGCGCCCTC GAACGTCTCG
GGCGTCGATG TCGACGGCGA CGGCCCGCCG CGCATCTCGA TCTACGGCTT CGGCCTGTTC
GGCCCCAACG GGCCGCTGCC GCTGCACCTG ACCGAGTACG CGCGCGAACG CAAGCGCCAC
CACAGCGACA ACACGCTCAG CGCCTTCGCC GACCTGTTCC ACCACCGGCT CATCCTGCTG
TTCTACCGGG CCTGGGCCGA TGCCCAGTCG GTCAACAGCC TGGACCGCCC CGACGGCCAC
CGCTTCGTCG ACTACGTGGC CAGCCTCATG AACATGGGGC AGCCGGGCCT CAAGGCGCGC
GACCGCATCG CCGACCATGC GCGCACCTTC ATGGCCGGGC ACCTCGTGCG CCAGACGCGC
AACCCCGAGG GGCTGATCCA GATCCTGCGG CTGTATTTCG ACGTGCCTGT GCGCGTCGAG
GAGTTCGTGA GCGACTGGGT GATGCTCGAC GAGCGCGAGA TCAGCCGCAT CGGCACTTCC
GGGCGCAACC AGAAGCTGGG CGCCGGCGCC ACCGTCGGGC TGGCGGTGCG CGATGCGCAG
GGCAAGTTCA GGCTCGAACT CGGGCCGCTC TCGCAGCGCG AGTTCCGCGA CTTCCTGCCG
GGCAGCAAGC GCCTGCAGCA GGTGGTCGAC TGGGTGCGCC AGTACGTGGG CATCGAGTTC
GCGTGGGAGC TGCGCCTCGT GCTCAAGAAG CAGGAAGCCC TCGGCATGCA GCTGGGCAGC
GACCAGCGCC TGGGCTGGGG CAGCTGGCTC GGCACGCGCC TCTCGCCCAC CGACGCCGGC
GACATGCTGT TCCAGCCCGA AGCCCTGTAT TCCCGTTCCG CATCGGCTGC TTCCGCGGCG
GCCGAAGCCT CTTCCATGGC CTTATGA
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| Protein sequence | MSMRTTAELA DDSQQAPPAA IEHAAPEHAA APARRGAAEA DPVLWAGLVD QPFEHDLFML
LRRLDAHGSH PLLGRAPRPL DEPLRLGQEP SMAFAPSNVS GVDVDGDGPP RISIYGFGLF
GPNGPLPLHL TEYARERKRH HSDNTLSAFA DLFHHRLILL FYRAWADAQS VNSLDRPDGH
RFVDYVASLM NMGQPGLKAR DRIADHARTF MAGHLVRQTR NPEGLIQILR LYFDVPVRVE
EFVSDWVMLD EREISRIGTS GRNQKLGAGA TVGLAVRDAQ GKFRLELGPL SQREFRDFLP
GSKRLQQVVD WVRQYVGIEF AWELRLVLKK QEALGMQLGS DQRLGWGSWL GTRLSPTDAG
DMLFQPEALY SRSASAASAA AEASSMAL
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