Gene Vapar_0198 details

Gene Information

• Locus tag: Vapar_0198
• ID: 7971407
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: +
• Start bp: 204767
• End bp: 206638
• Gene Length: 1872 bp
• Protein Length: 623 aa
• Translation table: 11
• GC content: 69%
• IMG OID: 644790801
• Product: type VI secretion protein, VC_A0110 family
• Protein accession: YP_002942127
• Protein GI: 239813217
• COG category: [S] Function unknown
• COG ID: [COG3519] Uncharacterized protein conserved in bacteria
• TIGRFAM ID: [TIGR03359] type VI secretion protein, VC_A0110 family

Plasmid Coverage information

• Num covering plasmid clones: 17
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGACGCCA GGCTGCTCGA CTACTACAAC CGCGAGCTCA CCTACATGCA CGAGCTCGGC 
GCCGAGTTCG CGCAGCGCTA CCCGAAGATC GCCGGGCGGC TGGGCATGCG CGGCATCGAG 
GTCAGCGACC CCTACGTGGA GCGCCTGCTC GAGGGCTTCA GCTTTCTCAC GGCGCGCATC 
CAGCTCAAGA TGGATGCGGA GTTTCCGCGC TTCTCGCAGC GGCTGCTCGA GGTGGTGTAC 
CCCAACTTCC TCGCGCCGCT GCCGGCCATG GCCGTGGTGC AGATCGACGG CAACCTCAAC 
GAGGGCTCGC TGAAGGCCGG CTACGAGCTG CCGCGCCACA CGATCATGCG CGGACGCATG 
ATCAAGGGCG AGCAGACGGC CTGCGAATTC CGCACCGGCC ACGAGGTCAC GCTGTGGCCC 
ATCAGGATCG CGGATGCGAG CATCGGCCCC GTGCCCGCGG AAATCGCGCA TGCGATGCCC 
GCGGTGGCCC AGCGCGCCAG GAGCGCGATC ACCATCAAGC TCGAAGCGGT GGGCGGCACC 
ACCTTTGCCG AGATGCCGAT CGAGCGGCTC GAGTTCTTTC TTTCGGGCGC GGAGCTGCAT 
GCGCTGCGCG TGCTCGAGCT TGCGGTGCAC CACAGCATCG GCACCGTGTG CCGCAGCGGC 
CCGGGCAGCA AGGCGCGCAT CGTTCCGCTC GGCGACGAAG CCATTCGCCA CGAGGGCTTC 
GATCCCGAGC AGGCGCTGCT GCCTTATGAC GCGCGCTCGT TCCAGGGCTA CCGGCTGCTG 
CACGAATACT TCGCCTTCCC CGACCGCTAC CTGTTCTTCA GCGTGAAGAA CCTGCGCGCG 
GCGGCCTCGG CCATGGGCGG CACCACGATG GAAATCGTGA TCCTGCTCGA CCGCGCCGAC 
GCCGACCTGG AGCGGCTGGT CGATGCCAAG CACTTCTCGC TGTTCTGCAC GCCCATCATC 
AACCTGGTGC CGCGCCGCAG CGACCGCATT CCGGTGGGCC CCGGGCAGCA CGAGCACCAT 
GCGGTGATCG ACCGCACGCG CCCGCGCGAC TTCGAAATCT TCACGGTCGA GCGCGTCACC 
GGCCACATGG CGAGCGGCTC GGAAGAGCGC GAGTTCAGGC CGTTCCTTGG CTCGTTCGCT 
GCCGACGACG GCGACTTCGG CGCGTACTTC TCGCTGCGCC GCGAGCCGCG CCTGGTGTCC 
GACCGCGCAC GCGCGCAGGG CACGCGCACC AGCTACACCG GCAGCGAGGT GTACGTGTCG 
CTGGTCGACC AGCACGACGC GCCCTTTCCG CACAGCCTGC GCCACATCAC CATCGACGCG 
CTGTGCACCA ACCGCGACCT GCCGCTGCTG CTGCCCACCG GGCTGGAGTC GGACTTCTCG 
CTGCGCGTGT CGGCGCCGGT GCGCGGCATC CGCATCCTGC GCGGGCCGTC GCGGCCCTAT 
CCGGCGCTGG CGGAGGGTGC GCTCACCTGG CGCCTGATCA GCCACCTGGG CCTCAACTAC 
CTGAGCCTGA CCGACGTCGA CGCCACGCAG GGCGCGGCCG CATTGCGCGA GATGCTCGAC 
CTCTACGGCA ACCTGGCCGA CCCGGCGGTG CGCCGCCAGA TCCAGGGCGT GCGCTCGATG 
GCGCTGGCGC CGGTGTTCCG CCGCCTGCCC GAGCCGGGGC CGATCGTCTT CGGGCGCGGG 
GTGGAAATCG CGCTGAAGAT CGACGAAGTG GCCTTCTCGG GCGCGAGCCC CTATCTCTTC 
GGCGCCGTGC TCGAGCAGTT CTTCAGCCGG CACGTGTCGC TCAACGCGTT CACCGAGTTC 
GCGCTCTCCA GCCTGCAGCG CGGCGAGATC GCGCGCTGGA CGCCGCGCAT CGGACGCCGT 
CCCGCCGTAT GA 

 

Protein sequence

MDARLLDYYN RELTYMHELG AEFAQRYPKI AGRLGMRGIE VSDPYVERLL EGFSFLTARI 
QLKMDAEFPR FSQRLLEVVY PNFLAPLPAM AVVQIDGNLN EGSLKAGYEL PRHTIMRGRM 
IKGEQTACEF RTGHEVTLWP IRIADASIGP VPAEIAHAMP AVAQRARSAI TIKLEAVGGT 
TFAEMPIERL EFFLSGAELH ALRVLELAVH HSIGTVCRSG PGSKARIVPL GDEAIRHEGF 
DPEQALLPYD ARSFQGYRLL HEYFAFPDRY LFFSVKNLRA AASAMGGTTM EIVILLDRAD 
ADLERLVDAK HFSLFCTPII NLVPRRSDRI PVGPGQHEHH AVIDRTRPRD FEIFTVERVT 
GHMASGSEER EFRPFLGSFA ADDGDFGAYF SLRREPRLVS DRARAQGTRT SYTGSEVYVS 
LVDQHDAPFP HSLRHITIDA LCTNRDLPLL LPTGLESDFS LRVSAPVRGI RILRGPSRPY 
PALAEGALTW RLISHLGLNY LSLTDVDATQ GAAALREMLD LYGNLADPAV RRQIQGVRSM 
ALAPVFRRLP EPGPIVFGRG VEIALKIDEV AFSGASPYLF GAVLEQFFSR HVSLNAFTEF 
ALSSLQRGEI ARWTPRIGRR PAV