| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0196 |
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| Symbol | |
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| ID | 7971405 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 203343 |
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| End bp | 204209 |
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| Gene Length | 867 bp |
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| Protein Length | 288 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 644790799 |
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| Product | virulence protein SciE type |
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| Protein accession | YP_002942125 |
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| Protein GI | 239813215 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4455] Protein of avirulence locus involved in temperature-dependent protein secretion |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGCGATG GGTTTGCAGT GCTGGGCGAG CGCTCCGTGG CCGAACACAC CGAATGGGTA
CAGCGGCAGA TTCGCGCGAG TCCACAGAAT GCCGGCCTGC GGCTTGCCCT CGGCCACTTT
CTTGCGCTGC GGGGCGACTG GCAGCGGGCT GAAGACCAGC TCAAGCTGGC CGCGAAGATC
GATCCTTCCT TCGCTCCCGC CAGTGCCACC TGCGCAATGG CGCTGGCCGC CGAGCGGCAT
CGAACCGAAT TCTGGAGCGG CGGCCGTGCG CCGGCCGTCG TGGCCGGCGA GGCCGGCTGG
GTCGCGGCGC TGATTGCTGC CGCCGCCCTG CCGCCCGAAC GCGACGCCGA AGCGGCCGAG
CTGCGCGAAG CCGCGCGGCA GGATGCGCCC GCATTGCAGG GCACGCTGAG CTGCGTCGAC
CGGTCGGACT CCCGCGCCGT GCAGGCCATC GACGGCGAGC CGGTGCAAAG CATTGAGTTC
GCCTGGCTTT GCGACGGCGA CGCGCGCATG GGCGCCGCGC TCGAGCTCCT CACGCCTTCG
GGCTATGCGT GGCTGCCGCT GCCGGCGGTG CGCCGCCTCA AGTTCTCCCG TCCGCAGCAC
CTGGTCGACC TGCTCTGGGC GCCGGCCGAG ATCGTGCTGC ATGACGGCCG CGGGCTCAAC
GGCCTGGTGC CGGTGCGCTA TCCCGGCGCG CTCGAGGCGC TGGACGACGA AACAACCCTG
GGCCGCCGCA CCGACTGGCT GCCGCTGGCC GGCGAGGACC AATACGCCGG CGTGGGCCAG
CGCACGCTGA TCAGCGAAGC CGGCGACCAT TCGCTGCTCG ACATCCGGCT GGTCGAGTTC
GCGCCTGCCG AGAGTGCTGC GCAGTGA
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| Protein sequence | MGDGFAVLGE RSVAEHTEWV QRQIRASPQN AGLRLALGHF LALRGDWQRA EDQLKLAAKI
DPSFAPASAT CAMALAAERH RTEFWSGGRA PAVVAGEAGW VAALIAAAAL PPERDAEAAE
LREAARQDAP ALQGTLSCVD RSDSRAVQAI DGEPVQSIEF AWLCDGDARM GAALELLTPS
GYAWLPLPAV RRLKFSRPQH LVDLLWAPAE IVLHDGRGLN GLVPVRYPGA LEALDDETTL
GRRTDWLPLA GEDQYAGVGQ RTLISEAGDH SLLDIRLVEF APAESAAQ
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