| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0188 |
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| Symbol | |
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| ID | 7971397 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 192461 |
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| End bp | 193621 |
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| Gene Length | 1161 bp |
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| Protein Length | 386 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644790791 |
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| Product | Extracellular ligand-binding receptor |
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| Protein accession | YP_002942117 |
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| Protein GI | 239813207 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGATTC CGATTTCAAG GCGCGCCCTG GTGGCGGGCG GCGCAGCCCT GGCACTGGGC
CCGGGCCTTC TTCGTTCGGC GCGCGCCGAC AACGGCGTGA CCGACGGCCT CATCCGCATC
GGCCAGTCGG CCGTGTTCAG CGGCCCGGCC AAGGACTTCG GCATCGACTA CCGCGCGGGC
ATCAAGCTGT ACTTCGAGCG CGCCAACAAG TCGGGCGGCA TCAACGGCCG CAAGCTCGAG
CTCGTCAGCT ACGACGATGC CTACGATCCC GCCAGGACGG CCGCCAACAC CGCGAAGCTG
ATCGACGAGG ACAAGGTCTT CGCGCTCGCG GGCTTCGTCG CCACCGGCAA CCTCGCGGCC
GCGATGCCGC TGGCCGAGAA GGCCGGCGTT CCGATGTTCG CGCCGCTGGT GGGCACCACC
TCGTTCCGCA CCAAGGTCAA CCGCCTGCTG TTCCACGTGC GCGCGGGCTA CGACCTCGAG
CTGCGCAAGA TCATCAGCCA TCTCTCGACC CTCAGCCTCG CGTCGATTGC GGTGGTCTAC
CAGGACAGCG CCTTCGGCAA GTCGAACCTC GCCACCTGCG AGCAGCTGGC CGCCGACTAC
AAGGTGCAGG TCGTGAAGAC GCTGCCGCTC GCGATTGCCG CCGAAGACGC GAAGCAGGTG
GTCGCCAGCC TGGCCGAGGC CAAGCCCGGC GCGGTCCTGA TGATCATGGC TGGGCGCATG
GTCGAAGTGT TCATGCGCGA CTACCGTGCG AACGGCGGGG CGGCGCCGCT CTATACGCTG
TCGGTCGGCA TCACCGACGC GGCCGGTTCC GCCAAGCGGC TCGAAGGCAA GCTCGCGGGC
CTGGTCACGG CCAGCATCGT GCCGCCGCCG CAGGCCGTGC GCGTGCCCAT CGTGGCCGAC
TACCAGCGCG ACCGCGCCGA GTTCGGCGAG AAGATCGACA GCTACACCAC GCTCGAAGGC
TACATCGCCT CGCGCGTGAT GGTCGAAGGC CTGCGCCGCG CGGGCAAGGC GCTCACGCGC
GACAGCTTCA TTGCCGGGCT CGAAGGCATC GGCAATGCGC GCTTCGGCGA TTTCCCGGTC
GAGTACAGCG CGAAGAACCA CAACGGCTCG ACCTTCGTGG ACCTGGAGAT GTACACCCGT
GACGGCCAGT TGCGGCGCTG A
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| Protein sequence | MTIPISRRAL VAGGAALALG PGLLRSARAD NGVTDGLIRI GQSAVFSGPA KDFGIDYRAG
IKLYFERANK SGGINGRKLE LVSYDDAYDP ARTAANTAKL IDEDKVFALA GFVATGNLAA
AMPLAEKAGV PMFAPLVGTT SFRTKVNRLL FHVRAGYDLE LRKIISHLST LSLASIAVVY
QDSAFGKSNL ATCEQLAADY KVQVVKTLPL AIAAEDAKQV VASLAEAKPG AVLMIMAGRM
VEVFMRDYRA NGGAAPLYTL SVGITDAAGS AKRLEGKLAG LVTASIVPPP QAVRVPIVAD
YQRDRAEFGE KIDSYTTLEG YIASRVMVEG LRRAGKALTR DSFIAGLEGI GNARFGDFPV
EYSAKNHNGS TFVDLEMYTR DGQLRR
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