| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0129 |
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| Symbol | |
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| ID | 7971665 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 128800 |
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| End bp | 129564 |
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| Gene Length | 765 bp |
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| Protein Length | 254 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 644790732 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_002942058 |
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| Protein GI | 239813148 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCTTCG ATCCTGTTTC CCGACTCGAC GGCAAGGTCG CCGTCATCAC CGGCGGCCTT
GGCGCCATCG GCTATGCGAC GGCGGTGCGC CTTGCAACGC TCGGCGCCAC CTGCGTGCTG
CTGCACCGCA AGGGCGACGA TGCGGCGGCC CGCGCGGCCG CCCTGCCCTC CGCCAGCGGA
CAGCGCCACG CGGCGATCCG TGCCGACATC GTCGACACGC CGAGCCTGGA GGCCGCGGCC
GCCGAGGTGA AGGCCGCGCA TGGGCGCTGC GACATCCTCG TCAACAGCGC CGGGCACACG
CAGCCCGTTC CCGCGGGCGA CCTCGATGCG CTGACCGACG AACTCATCGA CGACATCGTG
CGCGCCAACT TCCGCGGCGT GTTCGCAACC ATCCGCGCCT TCGCGCCGAT GCTGAAGGAC
AGCGGCGACG GGCTCGTCGC CAACATCTCG TCGATCGCCG GCTTCACGGG CGTGGGCAGC
AATCTCGCGT ATGTCGCGGC CAAGGCCGGG CTCGACGTGG TGGGCGATGC ACTGGCCAAG
GCGCTGGCGC CGGCGGTGCG CGTGGTGTCC GTCTCGCCGG GCGCGGTCGA ATCGGGCTTC
GTGCCAGGCC GCGGCGCCGA GTTCGCGAGC AAGATGGCGA GCACCACGCC GCTCGGGCGC
ATCGGCAAGC CCGACGACGT GGCCGCCGCG GTGGAGGCGC TCGCAACGAC GATGCGCTTC
GTCACCGGCA CGCGCATCGT GGTCGACGGA GGGCGCCACC TGTGA
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| Protein sequence | MSFDPVSRLD GKVAVITGGL GAIGYATAVR LATLGATCVL LHRKGDDAAA RAAALPSASG
QRHAAIRADI VDTPSLEAAA AEVKAAHGRC DILVNSAGHT QPVPAGDLDA LTDELIDDIV
RANFRGVFAT IRAFAPMLKD SGDGLVANIS SIAGFTGVGS NLAYVAAKAG LDVVGDALAK
ALAPAVRVVS VSPGAVESGF VPGRGAEFAS KMASTTPLGR IGKPDDVAAA VEALATTMRF
VTGTRIVVDG GRHL
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