| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0119 |
|---|
| Symbol | |
|---|
| ID | 7971655 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 119758 |
|---|
| End bp | 120999 |
|---|
| Gene Length | 1242 bp |
|---|
| Protein Length | 413 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 644790722 |
|---|
| Product | L-carnitine dehydratase/bile acid-inducible protein F |
|---|
| Protein accession | YP_002942048 |
|---|
| Protein GI | 239813138 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1804] Predicted acyl-CoA transferases/carnitine dehydratase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.391223 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGGCCA CCAAGCCCGC AGCCCTGGAC GGCATCAAGG TCCTCGATCT GTCCCGCGTG
CTCGCGGGCC CCTGGTGCAC GCAGATCCTC GCGGACCTGG GCGCCGACGT CGTCAAGATC
GAACGCCCCG GCGTCGGCGA CGACACGCGC ACCTGGGGCC CTCCGTTCAT CAAGGACGCG
GACGGCAACG ACACCGACCA GGCCAGCTAC TTCACGGCCT GCAACCGCAA CAAGCGCTCG
GTCACGGTCG ACATGGCCAC GCCCGACGGC CAGGCGCTCC TGAAGCAGAT GGCGGCGCAG
GCCGACATCG TGGTGGAGAA CTTCAAGACC GGCGGCCTGA AGCAGTACGG CCTCGACCAC
GAGAGCCTGC GCGCGGCCAA CCCGCGCCTC ATCTACTGCA GCGTGACCGG CTTCGGCCAC
GACGGCCCCT ACGCCGAGCG CGCGGGCTAC GACCTGATGA TCCAGGCCAT GACCGGCATG
ATGAGCATCA CCGGCCGTCC CGACGGCGAG CCCGGCGGCG GCCCGCTGCG CGTGGGCGTG
GCGCTCACCG ACCTGTTCAC CGGCGTCTAT GCAAGCACCG CCATCCTCGC GGCGCTGCAG
GTGCGCGGCC GCACGGGCGA AGGCCAGCAC ATCGACATGG CGCTGCTCGA CGTGGGCATG
GCCATCCTCG CCAACCAGGC GAGCGCCTTC CTCAACACCG GCAAGGCACC GCAGCGCCAG
GGCAACACGC ACCCGAGCCT CGCGCCGTAT CAAGACTTTC CGACGCAGGA CGGCTCGATG
CTGCTGGCCA TCGGCAACAA CGGCCAGTTC GCGCGCTTCT GCGAAGCGGC TGGCCATGCC
GAGTGGGCCG CCGATGCGCG CTTTGCGACC AACACGCTGC GCGTGAAGCA CCGCGGCGTG
CTCATCCCGA TGATGGAAGA GCTCACGCGC ACCCGCAGCA CCGCCGACTG GGTCGCGCTG
CTCGAAGACA AGGCCGTGCC CTGCGGCCCG ATCAACGACA TTGCGCAGGC TTTCGACGAC
GCGCAGGTCA AGTCGCGCGG CCTCGCGGTC ACGCTGCCGC GCGATGCGGG CGACGGCATC
GCCAGCATCA CCGGCGTGGC GAGCCCGCTG CGCCTCACGG CCACGCCGCC CGTGCTGCGC
CATGCGCCGC CCGCGCTCGG GCAGCACACG CGCGAGGTGC TGGCCGAGTT CGGCATCGAT
GGCGCGCGCT TCGACGCGCT GCGCGCGGCC GGCGTGGTGT AG
|
|---|
| Protein sequence | MTATKPAALD GIKVLDLSRV LAGPWCTQIL ADLGADVVKI ERPGVGDDTR TWGPPFIKDA
DGNDTDQASY FTACNRNKRS VTVDMATPDG QALLKQMAAQ ADIVVENFKT GGLKQYGLDH
ESLRAANPRL IYCSVTGFGH DGPYAERAGY DLMIQAMTGM MSITGRPDGE PGGGPLRVGV
ALTDLFTGVY ASTAILAALQ VRGRTGEGQH IDMALLDVGM AILANQASAF LNTGKAPQRQ
GNTHPSLAPY QDFPTQDGSM LLAIGNNGQF ARFCEAAGHA EWAADARFAT NTLRVKHRGV
LIPMMEELTR TRSTADWVAL LEDKAVPCGP INDIAQAFDD AQVKSRGLAV TLPRDAGDGI
ASITGVASPL RLTATPPVLR HAPPALGQHT REVLAEFGID GARFDALRAA GVV
|
|---|
| |