| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0115 |
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| Symbol | |
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| ID | 7971651 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 115971 |
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| End bp | 116810 |
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| Gene Length | 840 bp |
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| Protein Length | 279 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644790718 |
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| Product | transcriptional regulator, IclR family |
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| Protein accession | YP_002942044 |
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| Protein GI | 239813134 |
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| COG category | [K] Transcription |
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| COG ID | [COG1414] Transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.587027 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGGACA GCAGCTCCCC CCGCTCCTCC TCCTCTTCCA AGGCCGCCGG CAAGGTCATG
CGCATCGACC GCGACGGCGA CGGCACCGTG CAATCGCTCA CGCGCGCCAT GCAGCTGCTC
GAACTGCTGG CCGACGACGA CGAGGGCTAC CGCCTGGTCG ACATCGCGGC GCGCAGCGGC
CTCTCATCGT CCACCGCGCA CCGCCTGCTC ACCACGCTGG AGCAGCGCCA GTTCGTCCAG
TTCGACCGCG AAACCAGCCT CTGGTATGTG GGCGTGCGCT GCTTCTCGGT GGGCGCGGCC
TTCGGGCGCC GGCGCCGCAT TGCGCACCTG GCGCTGCCGG TGATGCGGCG GCTGCGCGAC
AGCTCGGGCG AAAGCATCAA CCTGGGCATT GCCGACCTGG GCGACATCGT GTTCGTCACA
CAGGTGGAAA GCCGCGAGCT GATGCGCGCC ATCGGCAAGC CGGGTTTCCG CGCACCGCTG
CACGGCACCG CCATGGGGCA GGCGATCCTG GCCGCCATGG CCGAGGACGA CGTGCTGCAG
TACCTGCGCA CCTACGGCCT GCCCAAGCTC ACGCCCAACA CCATCGCACG CGCATCGCGG
CTGCACGAAA CGCTGGGCGA GGTGCGCCGC GCGGGCTATG CGGTGGACGA CGAGCAGAAC
GCCGTGGGCC TGCGCTGCAT TGCCGCCGCC ATCCGCGACG AGCACGGCCA GCCCTTCGGC
GCGATCTCGC TGGTGGGGCC GACGCAGCGC ATCAAGGCGG CCGACTTCGC GCAGCTGGGC
GCCACGGTGC GCGGCGCCGC CGACGAGATC ACCGCGGCCT ACGGCGGGCG CCTGAAGTAG
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| Protein sequence | MTDSSSPRSS SSSKAAGKVM RIDRDGDGTV QSLTRAMQLL ELLADDDEGY RLVDIAARSG
LSSSTAHRLL TTLEQRQFVQ FDRETSLWYV GVRCFSVGAA FGRRRRIAHL ALPVMRRLRD
SSGESINLGI ADLGDIVFVT QVESRELMRA IGKPGFRAPL HGTAMGQAIL AAMAEDDVLQ
YLRTYGLPKL TPNTIARASR LHETLGEVRR AGYAVDDEQN AVGLRCIAAA IRDEHGQPFG
AISLVGPTQR IKAADFAQLG ATVRGAADEI TAAYGGRLK
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