| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0100 |
|---|
| Symbol | |
|---|
| ID | 7971636 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 99370 |
|---|
| End bp | 100695 |
|---|
| Gene Length | 1326 bp |
|---|
| Protein Length | 441 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 644790703 |
|---|
| Product | fumarylacetoacetase |
|---|
| Protein accession | YP_002942029 |
|---|
| Protein GI | 239813119 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0179] 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) |
|---|
| TIGRFAM ID | [TIGR01266] fumarylacetoacetase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.56864 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATGCCG CGCTCAACCA CACGCACGAC ACCAACGCCA GGAGCTGGGT CGCCGCTGCC
AACACGGAAG GCACCGACTT TCCGATCCAG AACCTGCCCT ACGCAGTGTT CCGTCGCACC
GGCAGCCCGC AGCCGTTTCG CGGCGGCGTG GCCATTGGCG ACCAGGTGCT CGACATGGCC
GCGCTCTCCG CGCGCCAGCT GCTCGACGGA CTCGCGCTCG ATGCGGCCCG TGCCGCCGCG
CTGCCCGCGC TCAACGATTT CTTCGCGCTC GGCGGCACCG CCTGGCGTGC GCTGCGCCAC
GCGGTGTTCG CCTTGCTGCG CGACGATGCA CCGGCCGCCA CGGCCAAGCT CGTGCGCGAA
TGCCTGGTGC CGCAGGCCGA GGTCGAATAC ACCTTGCCCG CGCGCATCGG CGACTACACC
GACTTCTACA CCTCCATCGA CCATGCGCTG AACATCAGCC GCCTGATGAA CCCCGAAGGC
GACGTGACGC CCAACTTCCG CTGGATTCCG ACGGCCTACC ACGGGCGCGT GTCGACCATC
GGCATCAGCG GCCAGCGCTT TCACCGCCCG ATGGGGCAGA CCATGGCGCC GGGCGCCAAG
GCGCCCACCT TCCACGCCTG CGCGCGGCTC GACTACGAGC TCGAGCTTGG CATCTGGATC
GGCGAAGGCA ATGCGGCCGG CGAACCGATT CCGCTCGAAC GCGCGGAAGA GCACATCTTC
GGCATCTGCC TGCTCAACGA CTGGTCGGCG CGCGACATCC AGTTCTGGGA GATGGCGCCG
CTCGGTCCCT TCCTTGCGAA GAATTTCGCG ACCACCATCT CGCCGTGGAT CGTGACGATG
GAAGCGCTCG CGCCCTACCG CCAGGCCTGG ACGCGGCCCG CCGACGAGCC CCAGCCGCTG
GCCTACCTCG AAAGCCGCGG CAACCGCGAA GGCGGCGCGA TCGACATCCG GCTGGAGGTC
TGGCTCGAAA GCGAGAGGGC GCGCAGCGAG GGGAGCGGGC CTTCGCGCCT GTCGCGCACC
AGCTTCAGGC ACCAGTACTG GAGCGTGGCG CAGATGGTGG CGCACCACAC GGTGGGCGGC
TGCAGCCTGA ACCCGGGCGA CCTGTTCGGC AGCGGCACCA TCTCGGGACC GGGGCCGGGC
GAGGCCGGCG CGATCATCGA GCTGACGCGC GCCGCGCAGG ACCCGGTCAC GCTGGCCAAC
GGCGAGCAGC GCGGCTTCCT GGAAGACGGC GATGCAGTGC TGCTGCGCGG ATGGTGCGAG
AAGCCGGGCC ATGCGCGCAT CGGCTTCGGC GAGAGCCGCG GGACGGTGCT GCCCGCCAAG
GGCTGA
|
|---|
| Protein sequence | MNAALNHTHD TNARSWVAAA NTEGTDFPIQ NLPYAVFRRT GSPQPFRGGV AIGDQVLDMA
ALSARQLLDG LALDAARAAA LPALNDFFAL GGTAWRALRH AVFALLRDDA PAATAKLVRE
CLVPQAEVEY TLPARIGDYT DFYTSIDHAL NISRLMNPEG DVTPNFRWIP TAYHGRVSTI
GISGQRFHRP MGQTMAPGAK APTFHACARL DYELELGIWI GEGNAAGEPI PLERAEEHIF
GICLLNDWSA RDIQFWEMAP LGPFLAKNFA TTISPWIVTM EALAPYRQAW TRPADEPQPL
AYLESRGNRE GGAIDIRLEV WLESERARSE GSGPSRLSRT SFRHQYWSVA QMVAHHTVGG
CSLNPGDLFG SGTISGPGPG EAGAIIELTR AAQDPVTLAN GEQRGFLEDG DAVLLRGWCE
KPGHARIGFG ESRGTVLPAK G
|
|---|
| |