Gene Vapar_0097 details

Gene Information

• Locus tag: Vapar_0097
• ID: 7971632
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: -
• Start bp: 97027
• End bp: 97566
• Gene Length: 540 bp
• Protein Length: 179 aa
• Translation table: 11
• GC content: 72%
• IMG OID: 644790699
• Product: putative outer membrane adhesin like proteiin
• Protein accession: YP_002942026
• Protein GI: 239813116

Plasmid Coverage information

• Num covering plasmid clones: 13
• Plasmid unclonability p-value: 0.889087
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAGCAGC AACAACACAA ATCCCTTTTC GTCGGCGCCT TGCTCGCAGG CCTTCTTGCC 
ATGAGCGGCT TCGCACAGGC ACAGAGCGTA GGCGTTGGCG TGGGCGTGAA TGCCGACGTC 
AACACATCGG GCAGCGCGAC CGCGCCCCAA CGCCAAGGCG CCGCGGGCGC CGGTGCACGC 
ACCGAGGGAA GTGCCGGCGG CAGTGCCGCC ACGAATGCCG GCGTGCAGCC GGTCGAAGTC 
CCCGGCAAGG CCGCAGGCGG GCTGGGCAAC ACCCTGGGCG GCGTGGTCGG CGGCGCGACG 
GGTGCGGTCG GCGGTGCCAC CAACGCAGTC GGCGGTGCGA CCAGCGCCGT GGGCGGTGCC 
ACCAATGCCG CGACTGGCGC GGCCGGCAAC GTGACCGGCG CGACCAATGT CGTCGGTGAC 
ACGGTGGGCG GCGTGACCGG TGCCGCAGGC TCGGCCGGCG GCGCGCTGAA GGCACCGGCC 
GTGGGCGCCA AGGCCAGCGG CAAGGCCAAG GGATCCGGCG CGGTCGACGT CAAGAAATAA 

 

Protein sequence

MKQQQHKSLF VGALLAGLLA MSGFAQAQSV GVGVGVNADV NTSGSATAPQ RQGAAGAGAR 
TEGSAGGSAA TNAGVQPVEV PGKAAGGLGN TLGGVVGGAT GAVGGATNAV GGATSAVGGA 
TNAATGAAGN VTGATNVVGD TVGGVTGAAG SAGGALKAPA VGAKASGKAK GSGAVDVKK