| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0094 |
|---|
| Symbol | |
|---|
| ID | 7971629 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 93679 |
|---|
| End bp | 95106 |
|---|
| Gene Length | 1428 bp |
|---|
| Protein Length | 475 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 644790696 |
|---|
| Product | benzoyl-CoA oxygenase, B subunit |
|---|
| Protein accession | YP_002942023 |
|---|
| Protein GI | 239813113 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3396] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | [TIGR03225] benzoyl-CoA oxygenase, B subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.606518 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCACGA TCAACTACAG CGAGAAGATC CCCAACAACG TCAACCTCGG CGAAGACCGC
ACGCTGCAGC GCGCGCTCGA AGGCTGGCAG CCCAACTTCA TCAACTGGTG GGACGACGTG
GGCCCCGAGG GCTCGACCAA CCACGAGGTC TACCTGCGCA CGGCCGTGAG CGTCGACCCG
CAGGGCTGGG CCCAGTTCGG CCACGTGAAG ATGCGCGACT ACCGCTGGGG CATCTTCCTG
AACCCGGGCG ATGCCAACCG CGAGATCCAC TTCGGCGACC ACAAGGGCGA GAAGGCCTGG
CAGGACGTGC CCGGCGAACA CCGCGCCAAC CTGCGCCGCA TCATCGTGAC GCAGGGCGAC
ACCGAGCCCG CATCGGTCGA GCAGCAGCGC CACCTGGGCC TGACCGCGCC GAGCATGTAC
GACCTGCGCA ACCTGTTCCA GATCAACGTG GAAGAGGGCC GCCACCTGTG GGCCATGGTC
TACCTGCTGC ACAAGCACTT CGGCCGCGAC GGCCGCGAGG AAGCCGAGGC GCTCTTGCAG
CGCACCTCGG GCGACCAGGA CAACCCGCGC ATCCTGGGTG CCTTCAACGA GAAGACGCCC
GACTGGCTCG CGTTCTTCAT GTTCACCTAC TTCACCGACC GCGACGGCAA GTTCCAGCTG
GCCGCGCTGG CCGAGAGCGC CTTCGATCCG CTCGCGCGCA CCACCAAGTT CATGCTGACC
GAGGAAGCGC ACCACATGTT CGTGGGCGAG AGCGGCGTCT CGCGCGTGCT GGCGCGCACC
GCGCAGGTCA TGAACGAACT CAAGACCGAC GACGCGCAGA AGGTGCGCGC GGCCGGCGCC
ATCGACCTTG GCACCATCCA GCGCTACCTG AACTTCCACT ACAGCGTGAC GATCGACCTG
TTCGGCGCCG ACCAGTCGAG CAACGCCGCC ATCTTCTACA GCTCGGGCCT GAAGGGCCGC
TACGAGGAAG GCAAGCGCGG CGACGACCAC GTGCTCAAGG GCCAGACCTA CAAGGTGCTC
GAGGTCAAGG ACGGCCAACT CGTCGAAAAG GACGTGCCGA TGCTCAACGC ACTCAACGAA
GTGCTGCGCG ACGACTTCAT CAAGGACTCG GTGGCCGGCG TCGGCCGCTG GAACAAGGTG
CTCGAGAAGG CCGGCATCCC CACGCGCCTG ACCGTGCCGC ACAAGGCCTT CAACCGCCAG
ATCGGCGCGC TCGCCGGCAT CAAGATGTCG CCCGAGGGCC GCGTGGTGAA CGAGGTCGAA
TGGGCCGCCA AGCGCAATGA ATGGCTGCCG AGCGCCGAAG ACTTCGCTTT CGTGGCATCG
TTGATGGGCC GCGTGGTCGA GCCCGGCAAG TTCGCAGGCT GGATCTCGCC GCCGGTGATG
GGCATCAACC GCCAGCCGGT GGATTTCGAG TACGTGCGTT TCGGTTGA
|
|---|
| Protein sequence | MSTINYSEKI PNNVNLGEDR TLQRALEGWQ PNFINWWDDV GPEGSTNHEV YLRTAVSVDP
QGWAQFGHVK MRDYRWGIFL NPGDANREIH FGDHKGEKAW QDVPGEHRAN LRRIIVTQGD
TEPASVEQQR HLGLTAPSMY DLRNLFQINV EEGRHLWAMV YLLHKHFGRD GREEAEALLQ
RTSGDQDNPR ILGAFNEKTP DWLAFFMFTY FTDRDGKFQL AALAESAFDP LARTTKFMLT
EEAHHMFVGE SGVSRVLART AQVMNELKTD DAQKVRAAGA IDLGTIQRYL NFHYSVTIDL
FGADQSSNAA IFYSSGLKGR YEEGKRGDDH VLKGQTYKVL EVKDGQLVEK DVPMLNALNE
VLRDDFIKDS VAGVGRWNKV LEKAGIPTRL TVPHKAFNRQ IGALAGIKMS PEGRVVNEVE
WAAKRNEWLP SAEDFAFVAS LMGRVVEPGK FAGWISPPVM GINRQPVDFE YVRFG
|
|---|
| |