Gene Vapar_0092 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_0092 
Symbol 
ID7971627 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp90881 
End bp91831 
Gene Length951 bp 
Protein Length316 aa 
Translation table11 
GC content71% 
IMG OID644790694 
Productanaerobic benzoate catabolism transcriptional regulator 
Protein accessionYP_002942021 
Protein GI239813111 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0703] Shikimate kinase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACGAGC ACGTAGACGC GGTGCTGGCC CCCGCGCCCG AAGAAGGCCA GCGCGCCGGC 
AACCCCGCGG CACCGGCCGG GGAGGCCAAG AATCCATTGC TGGCGGCATT GGGCGAGCGC
GTGCGCAACC TGCGCGCGCA GCGCGGCCTC ACGCGCAAGG CGGTGGCCAT TGCGGCCGAC
GTGTCGGAGC GGCATCTGGC CAATCTCGAA TACGGCATCG GCAATGCGTC GATCCTGGTG
CTGCAGCAGG TGGCCGGCGC GCTGCACTGC TCGCTGGCCG AGCTGGTCGG CGACGTGACC
ACCAGCTCGC CCGAGTGGCT GCTGATCCGC GAGCTGCTAG AGAACCGCAG CGAGGCCGAC
CTGCGCCGCG TGCGCGTGGC CGTGGGTGAG CTGCTGGGCA CGGCCTCGGT CGATCCGGCG
CGCCACCGCC GCATTGCGCT CGTGGGCCTG CGCGGCGCGG GCAAGTCGAC GCTCGGGCAG
ATGCTGGCCG ACGACCTCGA CGTGCCCTTC GTGGAACTGA GCCGCGACAT CGAGAAGCTC
GCAGGCTGCA GCGTGCGCGA GATCCACGAC CTCTACGGCA CCAACGCCTA CCGCCGCTAC
GAGCGCCGCG CGCTCGAGGA AGCCATCCAG ATCTACGGCG AGGTGGTCAT CGCCACGCCG
GGCGGCATCG TCTCGGACCC CGCCACCTTC AACGAGCTGC TCGCGCACTG CACCACCGTG
TGGCTGCAGG CCGCGCCCGA GGAGCACATG GGCCGCGTGG CCGCGCAGGG CGACACCCGC
CCCATGGCCG CCAGCAAGGA AGCCATGGAA GACCTGCGCC GCATCCTGAA CGGCCGCGCC
GCCTTCTATT CGAAGGCCGA TCTCTCGGTG GACACCAGCG GCAAGACGCT GGCGCAGAGC
TTCCAGGCGC TGCGCACGGT GGCCCGCCAG GCGATCGGCA CCGGCGCCTG A
 
Protein sequence
MNEHVDAVLA PAPEEGQRAG NPAAPAGEAK NPLLAALGER VRNLRAQRGL TRKAVAIAAD 
VSERHLANLE YGIGNASILV LQQVAGALHC SLAELVGDVT TSSPEWLLIR ELLENRSEAD
LRRVRVAVGE LLGTASVDPA RHRRIALVGL RGAGKSTLGQ MLADDLDVPF VELSRDIEKL
AGCSVREIHD LYGTNAYRRY ERRALEEAIQ IYGEVVIATP GGIVSDPATF NELLAHCTTV
WLQAAPEEHM GRVAAQGDTR PMAASKEAME DLRRILNGRA AFYSKADLSV DTSGKTLAQS
FQALRTVARQ AIGTGA