Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_0092 |
Symbol | |
ID | 7971627 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 90881 |
End bp | 91831 |
Gene Length | 951 bp |
Protein Length | 316 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 644790694 |
Product | anaerobic benzoate catabolism transcriptional regulator |
Protein accession | YP_002942021 |
Protein GI | 239813111 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0703] Shikimate kinase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAACGAGC ACGTAGACGC GGTGCTGGCC CCCGCGCCCG AAGAAGGCCA GCGCGCCGGC AACCCCGCGG CACCGGCCGG GGAGGCCAAG AATCCATTGC TGGCGGCATT GGGCGAGCGC GTGCGCAACC TGCGCGCGCA GCGCGGCCTC ACGCGCAAGG CGGTGGCCAT TGCGGCCGAC GTGTCGGAGC GGCATCTGGC CAATCTCGAA TACGGCATCG GCAATGCGTC GATCCTGGTG CTGCAGCAGG TGGCCGGCGC GCTGCACTGC TCGCTGGCCG AGCTGGTCGG CGACGTGACC ACCAGCTCGC CCGAGTGGCT GCTGATCCGC GAGCTGCTAG AGAACCGCAG CGAGGCCGAC CTGCGCCGCG TGCGCGTGGC CGTGGGTGAG CTGCTGGGCA CGGCCTCGGT CGATCCGGCG CGCCACCGCC GCATTGCGCT CGTGGGCCTG CGCGGCGCGG GCAAGTCGAC GCTCGGGCAG ATGCTGGCCG ACGACCTCGA CGTGCCCTTC GTGGAACTGA GCCGCGACAT CGAGAAGCTC GCAGGCTGCA GCGTGCGCGA GATCCACGAC CTCTACGGCA CCAACGCCTA CCGCCGCTAC GAGCGCCGCG CGCTCGAGGA AGCCATCCAG ATCTACGGCG AGGTGGTCAT CGCCACGCCG GGCGGCATCG TCTCGGACCC CGCCACCTTC AACGAGCTGC TCGCGCACTG CACCACCGTG TGGCTGCAGG CCGCGCCCGA GGAGCACATG GGCCGCGTGG CCGCGCAGGG CGACACCCGC CCCATGGCCG CCAGCAAGGA AGCCATGGAA GACCTGCGCC GCATCCTGAA CGGCCGCGCC GCCTTCTATT CGAAGGCCGA TCTCTCGGTG GACACCAGCG GCAAGACGCT GGCGCAGAGC TTCCAGGCGC TGCGCACGGT GGCCCGCCAG GCGATCGGCA CCGGCGCCTG A
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Protein sequence | MNEHVDAVLA PAPEEGQRAG NPAAPAGEAK NPLLAALGER VRNLRAQRGL TRKAVAIAAD VSERHLANLE YGIGNASILV LQQVAGALHC SLAELVGDVT TSSPEWLLIR ELLENRSEAD LRRVRVAVGE LLGTASVDPA RHRRIALVGL RGAGKSTLGQ MLADDLDVPF VELSRDIEKL AGCSVREIHD LYGTNAYRRY ERRALEEAIQ IYGEVVIATP GGIVSDPATF NELLAHCTTV WLQAAPEEHM GRVAAQGDTR PMAASKEAME DLRRILNGRA AFYSKADLSV DTSGKTLAQS FQALRTVARQ AIGTGA
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