| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0089 |
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| Symbol | |
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| ID | 7971624 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 87084 |
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| End bp | 88631 |
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| Gene Length | 1548 bp |
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| Protein Length | 515 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644790691 |
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| Product | benzoate-CoA ligase family |
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| Protein accession | YP_002942018 |
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| Protein GI | 239813108 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG0365] Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases |
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| TIGRFAM ID | [TIGR02262] benzoate-CoA ligase family |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCCTGC CCCACCGATT CAATTTCGCC GAGCACCTGT TCGCGCTGAA CCGCGGCCGC
GCCGAGCGCA CCGCCTACAT CGACGACCGC GGCACGCTCG CCTACGGCCA GCTCGAGGAC
CGCGCGCGCC GCCTGGCCGC CGCGCTCAAG GCCGCCGGCG TGCGGCGCGA AGAGCGCGTG
CTGCTGCTGA TGCTCGACAG CAGCGACTGG CCCGTGAGCT TTCTCGGCTG CCTCTATGCC
GGCGTGGTCC CCGTCGCCGT CAACACGCTG CTCACGCCCG CGGACTACGC CTACATGCTC
GACCACAGCC GCGCACAGGC CGCGCTGGTG TCGGGCGCGC TGCTGCCCAC GCTGCAGGAG
GCGATGGCGC TCGGCCCGCA CGAAGTGCAC ACGCTGATCG TCTCGCAGCC CACGGGCGCG
CTGCCCGAAG GCGCGCAGGA ATTCGAAGCC GCGCTGGCCG CCGCCGCGCC GATGGCGGCG
CCCGCGCCCA CGGCCTCCGA CGATCCCGGC TTCTGGCTGT ATTCCTCCGG CTCCACCGGC
AAGCCCAAGG GCACGGTCCA CACGCACGCC AACCTGTGGT GGACGGCCGA GCTCTACGGC
AAGCCGATAC TCGGGCTGAC CGAGAACGAC GTGTGCTTCT CGGCCGCCAA GATGTACTTC
GCGTACGGGC TGGGCAATGC GCTGACCTTT CCGCTGTCGG TCGGGGCCAC GGTGGTGCTG
ATGGCCGAGC GCCCCACGCC CGACGCCACC TTCCGCCGCT GGGTGGAGCA CAAACCCACG
GTCTTCTTCG GCGCGCCCAC CGGCTTCGCG GGCATGCTCG CCTCGCCGAA GCTGCCGGCG
CGCGAAGCCG TGGCCCTGCG CATGTGTTCT TCCGCCGGCG AGGCATTGCC CGGCGAGATC
GCGCAGCGCT TCAAGGCGCA CTTCGGCTGC GAGATCATCG ACGGCATCGG CTCCACCGAG
ATGCTGCACA TCTTCATCTC CAACCGCCCC GGCGACGTGC GCTACGGCAC CACGGGCCGG
CCGGTGGAAG GCTACGAGGT CGAGCTGCGC GGCGAGGACG GCCGCCCGGT GCCCGATGGC
GAAGTGGGCG ACCTCTACAT CCGCGGCCCG AGCGCGGCGC TCATGTACTG GTGCAACCGC
GAGAAGTCGC GCGAGACCTT CCAGGGCGGC TGGACCAAGA GCGGCGACAA GTACACGCGC
GACGCCGACG GCTACTACAC CTATGCCGGG CGCAGCGACG ACATGCTCAA GGTCAGCGGC
ATCTATGTGT CGCCCTTCGA GGTGGAAGCC ACGCTGATGC AGCACCCCGC GGTGCTCGAG
GCCGCGGTGA TCGGCAAGGA AGACGCGGAC GGGCTGACCA AGACCAAGGC CTTTGTCGTG
CTGAAGGACG GCCAGTCGGT CAGCGACGAG GAGCTGAAGG CCTTCGTGAA GGAAAGGCTC
GCGCCGTACA AGTACCCGCG CTTCCTGGAG TTCGTGCAGG AGCTGCCGAA GACGGCGACG
GGGAAGATCC AGCGGTTCAG GCTGCGGGAG CGGGAGAGGC AGGCATGA
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| Protein sequence | MTLPHRFNFA EHLFALNRGR AERTAYIDDR GTLAYGQLED RARRLAAALK AAGVRREERV
LLLMLDSSDW PVSFLGCLYA GVVPVAVNTL LTPADYAYML DHSRAQAALV SGALLPTLQE
AMALGPHEVH TLIVSQPTGA LPEGAQEFEA ALAAAAPMAA PAPTASDDPG FWLYSSGSTG
KPKGTVHTHA NLWWTAELYG KPILGLTEND VCFSAAKMYF AYGLGNALTF PLSVGATVVL
MAERPTPDAT FRRWVEHKPT VFFGAPTGFA GMLASPKLPA REAVALRMCS SAGEALPGEI
AQRFKAHFGC EIIDGIGSTE MLHIFISNRP GDVRYGTTGR PVEGYEVELR GEDGRPVPDG
EVGDLYIRGP SAALMYWCNR EKSRETFQGG WTKSGDKYTR DADGYYTYAG RSDDMLKVSG
IYVSPFEVEA TLMQHPAVLE AAVIGKEDAD GLTKTKAFVV LKDGQSVSDE ELKAFVKERL
APYKYPRFLE FVQELPKTAT GKIQRFRLRE RERQA
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