| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0087 |
|---|
| Symbol | |
|---|
| ID | 7971622 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 84960 |
|---|
| End bp | 86144 |
|---|
| Gene Length | 1185 bp |
|---|
| Protein Length | 394 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 644790689 |
|---|
| Product | Extracellular ligand-binding receptor |
|---|
| Protein accession | YP_002942016 |
|---|
| Protein GI | 239813106 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCCCAT TCACCCCGGT TCGCACTGCC CGCCTGGCCC TCACAGCCAT CGCCTTCGCC
GCCCTGGCCA GCGCCGCCGG CGCGCAGGGT TCGGCCAAGC TCAAGGTCGG CCTGATGCTG
CCCTACAGCG GCACCTACAC CGCGCTGGGC GTGGCCATCG AGAACGGCTT CAAGCTCTAT
GTCGACGAGC ACGGCGGCAA GCTCGCGGGC CGCGAGATCG AATACTTCAA GGTCGACGAC
GAGTCCGACC CGGCCAAGGC CACCGACAAC GTCAACAAGC TCATCAAGCG CGACAACGTC
GACGTGATCG TCGGCACCGT GCACTCGGGC GTGGCCATGG CCATGGCCAA GGCCGCCAAG
GAAAGCGGCA CCGTGCTGAT CGTGCCGAAC GCGGGCGCCG ACGCGGTCAC AGGCCCGATG
TGCGCACCCA ACATCTTCCG CAGTTCGTTC AGCAACTGGC AGCCGGCCTT CGCGATGGGC
GAAGTGGCGG CCAAGCAGCA GGGCAAGAAG AAGGCGATGA CCATCACCTG GAAGTACGCG
GCGGGCGACG AGTCGGTCAA CGGCTTCAAG GAAGGCTTCG AGAAGAACGG CGGCAAGGTC
GACAAGCAGC TCACGCTGCC GTTTCCCAAC GTCGAGTTCC AGGCGCTCCT GACCGAGATC
GCGGCGGCCA AGCCCGATGC GGTGTATGCC TTCTTCGCAG GTGGCGGCGC GGTGAAGTTC
GTCAAGGACT ACCAGGCCGC GGGCCTGAAC AAGACCATTC CGCTCTACGG CCCGGGCTTC
CTGACCGACG GCACCTTGGA TGCGCAGGGC GAGGCCGCGC AAGGCATGCT GACCACGCTG
CACTATGCCG ACGGCCTCAA CACGGCGCGC GACAACGCCT TCCGGGTCGG CTACGCCAAG
GCCTTCAAGC TGCAGCCCGA CGTGTATGCC GTGCAGGGCT ACGACGCGGC GCAGATGCTG
GGCGTGGGCC TGGCCGCCAC CAAGGGCGAC ATCGGCAAGA AGGCCGAATT CACGGCCGCC
ATCGAGAAGG CGAAGATCGA CAGCCCGCGC GGCACGTTCA CCATGAGCAA GTCGCACAAC
CCGGTGCAGG ACATCTACCT GCGCAAGGTG GAAGGCAAGG AGAACAAGCT GGTGAGCATC
GCGATCAAGG GCCTCACGGA CCCGGCCCGC GGCTGCAGGA TGTGA
|
|---|
| Protein sequence | MTPFTPVRTA RLALTAIAFA ALASAAGAQG SAKLKVGLML PYSGTYTALG VAIENGFKLY
VDEHGGKLAG REIEYFKVDD ESDPAKATDN VNKLIKRDNV DVIVGTVHSG VAMAMAKAAK
ESGTVLIVPN AGADAVTGPM CAPNIFRSSF SNWQPAFAMG EVAAKQQGKK KAMTITWKYA
AGDESVNGFK EGFEKNGGKV DKQLTLPFPN VEFQALLTEI AAAKPDAVYA FFAGGGAVKF
VKDYQAAGLN KTIPLYGPGF LTDGTLDAQG EAAQGMLTTL HYADGLNTAR DNAFRVGYAK
AFKLQPDVYA VQGYDAAQML GVGLAATKGD IGKKAEFTAA IEKAKIDSPR GTFTMSKSHN
PVQDIYLRKV EGKENKLVSI AIKGLTDPAR GCRM
|
|---|
| |