Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_0086 |
Symbol | |
ID | 7971621 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 83932 |
End bp | 84804 |
Gene Length | 873 bp |
Protein Length | 290 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 644790688 |
Product | inner-membrane translocator |
Protein accession | YP_002942015 |
Protein GI | 239813105 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0559] Branched-chain amino acid ABC-type transport system, permease components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGGATTTCG GCACCTTCCT TGTCCAGTGC CTGAACTCGG TTCAGTACGG ACTTCTTCTG TTCCTGGTGG CCTCGGGGCT CACGCTGATC TTCGGGATCA TGGGCGTGAT CAACCTTGCG CACGGCAGCT TCTACATGAT CGGCGCGTAC ATGGCGTTCG CGCTCTCGCC GCTGTTCGGC GACCAGTTCT TGCTGATGCT GGTGGCCGGC GTGGTGCTGG CGGCGATCTT CGGCTACCTG CTCGAATGGG CCTTCTTCAG CTACCTCTAC CAGCGCGACC ACCTGCAGCA GGTGCTGATG ACCTACGGGC TCATCCTGGT GTTCGAGGAG CTGCGCTCGA TTCTCGTGGG CAACGACGTG CACGGCGTGA AGGTGCCGGC CTGGCTCGAC GGCAGCTTCG CGCTCGGCAA CGTCATGAGC TATCCGTGGT ACCGGCTCTT CGCTTCGGCC GCCTGCATCG TGCTGGCGGT GGCGCTGTAC TGGGTGGTCA ACCGCACGCG GCTGGGCATG ATGATCCGCG CCGGCGCGAG CAACCGCGAC ATGGTGCGGG GCCTGGGCAT CGACGTGAAG AGGCTCTACC GCATCGTGTT CGCGGCCGGC GTGGCGCTCG CGGCGCTGGC CGGGATGATC GCGGCGCCGA TGTCCTCGGT CTATCCCAAC ATGGGTGCGA GCGTGCTCAT CATCTGCTTC GTGCTGGTGG TGATCGGCGG CATCGGCTCG ATCACGGGCG CGCTCGTGGC CTCGCTGCTG GTGGGCTTCG TCGACACCTT CGGCAAGGTG TTCTTCGCGG ACCTGAGCGG CATCGGCATC TACCTCCTGA TGGCCATCGT GCTGATCTGG AGGCCCGAAG GGCTGATGGG GAGGCGGCCA TGA
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Protein sequence | MDFGTFLVQC LNSVQYGLLL FLVASGLTLI FGIMGVINLA HGSFYMIGAY MAFALSPLFG DQFLLMLVAG VVLAAIFGYL LEWAFFSYLY QRDHLQQVLM TYGLILVFEE LRSILVGNDV HGVKVPAWLD GSFALGNVMS YPWYRLFASA ACIVLAVALY WVVNRTRLGM MIRAGASNRD MVRGLGIDVK RLYRIVFAAG VALAALAGMI AAPMSSVYPN MGASVLIICF VLVVIGGIGS ITGALVASLL VGFVDTFGKV FFADLSGIGI YLLMAIVLIW RPEGLMGRRP
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