| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0064 |
|---|
| Symbol | |
|---|
| ID | 7974022 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 60477 |
|---|
| End bp | 61394 |
|---|
| Gene Length | 918 bp |
|---|
| Protein Length | 305 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 644790666 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002941993 |
|---|
| Protein GI | 239813083 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG2267] Lysophospholipase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGAGCA CCACCACCTC CGCGGCCACG CACGCCGCGC AGTCCAACTA CTACCGCCCG
GGCCGGCTGA TGCGCGCCTT GCGCTTCGGC CTGACCGCCT CGCAGCGCCT GTGGCCCGCG
CTGGGCGTGC GCGCGGCCTA CCGCGTGTTC GGCACGCCGC TGCCGCCCAA GTGGCTCTAC
CGCGGCCAGG GGCCGGGCGC GGCGTGGCGG CGCGAGGCCT GGGCCTTCGA AGACGCCGGC
CTCGGCCTCT ATCACCTGGC TGCGCAGGAC TTCGGTGCGG AATCGGCGCC CGTCGTGCTG
CTGGTGCACG GCTGGGGCGG GCATGCAGGG CAGATGCTGG CACTCGCGCA GGCGCTGGCT
GATGCGGGCC TGCGGCCGGT GCTGCTCGAA CTGCCGGCCC ATGGCCGCAG CGCGGGCACC
ATGAGCAACT CGCCGCAGTT CGCGCGGGCC ATTGCGTACG TGGTTGCCAG GCTGGCGGCC
GACGGCCATG CGCTGCGCGC GGTGGCCGCC CATTCGCTGG GCGCCAACGG GCTGGCGCTG
GCGGCCGCGC AGGGCCTGCA GGCCCTGCGG CTGGTGCTGC TCGCGCCGCC AGCCTCGCCA
CGCGAATACA CGCGCTACTT CGCGCACACC TTCGGCCTCA GCGAAGCGAC GCGCCTGGCC
ATGCAGCGGC GGTTCGAGGC GCGCGAAGGC GTCCTGATGG CGCAGCTGGA GCCGGCGGCC
GTCGGTCCGC GCATCGCGCA GCCGACGCTG ATCGTGCATG ACCACGACGA CCGCGTGAAC
CGCTTTGCCG ATGCCGAGGC CTACAGGGAC GCGATCAAGG GAGCGCGGCT GGTGGCCACG
CAGGGACTGG GGCACCGCCG CATCCTCAAG GAGGAGGACG TGGTCCGCCA GGTGGTGCGC
TTCGTGGCGC AGCCCTGA
|
|---|
| Protein sequence | MTSTTTSAAT HAAQSNYYRP GRLMRALRFG LTASQRLWPA LGVRAAYRVF GTPLPPKWLY
RGQGPGAAWR REAWAFEDAG LGLYHLAAQD FGAESAPVVL LVHGWGGHAG QMLALAQALA
DAGLRPVLLE LPAHGRSAGT MSNSPQFARA IAYVVARLAA DGHALRAVAA HSLGANGLAL
AAAQGLQALR LVLLAPPASP REYTRYFAHT FGLSEATRLA MQRRFEAREG VLMAQLEPAA
VGPRIAQPTL IVHDHDDRVN RFADAEAYRD AIKGARLVAT QGLGHRRILK EEDVVRQVVR
FVAQP
|
|---|
| |