Gene Vapar_0057 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_0057 
Symbol 
ID7974015 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand- 
Start bp56686 
End bp57324 
Gene Length639 bp 
Protein Length212 aa 
Translation table11 
GC content71% 
IMG OID644790659 
Productlipolytic protein G-D-S-L family 
Protein accessionYP_002941986 
Protein GI239813076 
COG category[E] Amino acid transport and metabolism 
COG ID[COG2755] Lysophospholipase L1 and related esterases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGCGAC GTCACCTCCT CCACCTATTG GCCGGCGTGC CCGCAGCCGC CCTTGTGGCC 
GCCTGCGGCA AGCGCAAGCC CTCCGCCGCC GCGCTGAAAT CCGATGCCCG CGTGCTCGCG 
CTGGGCGACA GCCTGACTTT CGGCTACGGC GCGCCGCCCG AAGCCGCCTG GCCCGTGAAG 
CTGGGCGAGC TCACCGGTTG GCAGATCGAG AACGCGGGCC TCAATGGCGA CACCTCGGCC 
GGCGCGCTGG AGCGCCTCGC GCCGCTGCTG GCTGCCGGCA GCTACGACGC GGTATTGATC 
GGCATCGGCG GCAACGACAT GCTGCGCGGC GTGCCGCCCG CGGCCACGCG CGAGAACCTC 
GCGGCTCTCG TGAGCCAGGC GCGCGCACAC ACACCCTACG TGGCGCTGCT GGCCACGCCC 
TCGCCCGACG CGATGCGCGC GGTCGTCGGC TCGCTGAGCG ATGCACTGTT CTACGAGGAG 
GTGGCGAAGT CGGGGCAGGC GCTGCTCGTG CCCAATGTGT ATTCGAGCGT GCTGTCGGAC 
GCATCGCTGC GCTCCGACCG CATCCATGCC AATGCCGAAG GCTATGCGCG CATTGCGCAG 
CAGCTCGCCG ACCAGCTCAA GGCCGCAGGC TGGCGCTGA
 
Protein sequence
MKRRHLLHLL AGVPAAALVA ACGKRKPSAA ALKSDARVLA LGDSLTFGYG APPEAAWPVK 
LGELTGWQIE NAGLNGDTSA GALERLAPLL AAGSYDAVLI GIGGNDMLRG VPPAATRENL 
AALVSQARAH TPYVALLATP SPDAMRAVVG SLSDALFYEE VAKSGQALLV PNVYSSVLSD 
ASLRSDRIHA NAEGYARIAQ QLADQLKAAG WR