| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0031 |
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| Symbol | |
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| ID | 7973989 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 32717 |
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| End bp | 34960 |
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| Gene Length | 2244 bp |
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| Protein Length | 747 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 644790633 |
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| Product | heavy metal translocating P-type ATPase |
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| Protein accession | YP_002941960 |
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| Protein GI | 239813050 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG2217] Cation transport ATPase |
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| TIGRFAM ID | [TIGR01494] ATPase, P-type (transporting), HAD superfamily, subfamily IC
[TIGR01511] copper-(or silver)-translocating P-type ATPase
[TIGR01525] heavy metal translocating P-type ATPase |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGACAATC TGCTGCACAA CCTACACGAC CCGATGAGCA CCCTCGATCT TTCCGTCGGC
GGCATGACCT GCGCCTCTTG CGTGATGCGC GTGGAACGCG CGCTCAAGAA CGTGCCGGGC
GTGCAGGACG TGAGTGTCAA CCTCGCGACC GAATCGGCCC GCGTGGTGAC CGCCGCCGGC
GGCGAAGACA TGAACGCCCG CCTGCGCCGC GCCGTGCGCG CCGCCGGCTA CGAGCCGCGC
GCGGCCAGCA GCGCGGCCGA CGACGCCGCT GCGCTGTCGC CCTGGTACGG TTTCGGGCCC
GTGGGCGTCG GGCTGCTGCT CTCGATACCG CTCTTGGCAC CGATGCTCGG CCAACCCTTC
GGGCAGGACT GGATGCTGGC GCCCTGGCTG CAGCTGCTGC TGGCGGCGCC AGTGCAGTTC
TGGCTCGGCG CGCGCTTCTA CCGCGCGGGC TGGCATGCCG CAAGGGCGGG CACCGGCAAC
ATGGACCTGC TGGTGGCGCT CGGCACCAGC GCGGCATTCG GCTTGTCGCT CTGGCTCTGG
TGGCGCGCGG CCACGGGCGA TCATGCGGGG CACGGCGGCA TGCCGCATCT GTATTTCGAA
GCCTCGGCCG TGGTGATCAC GCTGGTGCTG CTCGGCAAGT GGCTGGAGGC GCGCGCCAAG
CGGCAGGCCA CCTCGGCCAT CCGCGCGCTG CAGCAGTTGC GGCCCGAGAC CGCGCACCTG
GTCGGTCCGC GCGGCGAAAG CGACGTGCCG TTGGCCGAGG TGATGGTGGG CGACCGGCTC
GCGGTGCGTC CGGGCGAACG CGTGCCCGCC GATGCGCGCG TGATCGAGGG GCAGTCCGAG
GTCGATGAAT CGATGCTCAC GGGCGAGCCG CTGCCGGTGC CGAAGGGCCC TGGCGACGCA
CTGACGGGCG GCGCCGTGAA CGGCGACGGC CGCATGGTCG TCGAGGTGAG TGCGGTGGGT
GCCGAGAGCG TGCTGGCGCG CATCATCCGC CTGGTCGAGG ATGCGCAGGC CGCCAAGGCG
CCGATCCAGC GCCTGGTGGA CCAGGTCGCG GCCGTGTTCG TGCCGGTGGT GCTGGCGATT
GCGCTGGCCA CGCTGGCGGG CTGGCTGCTC GCGGGCGCCG GCATCGAGCT TGCGATGATC
CATGCGGTGG CCGTGCTGGT GATTGCCTGC CCCTGTGCAC TGGGCCTGGC AACGCCGGTC
GCGGTGATGG CCGGCACCGG CGTGGCGGCG CGTCGCGGCA TCCTCATCAA GGACGCGCGG
GCGCTGGAGC TGGCGCACCG TGTCGGCACC GTGGCCTTCG ACAAGACCGG CACGCTGACG
CTGGGCCGCC CGGTGCTCAC GGCGCTGGTG CCGGTGGCGG GCGGCGGCGA CGAAGCCGCA
TTGCTCGCCA TCGCTGCGAG CCTGCAAGGC GGCAGCGAGC ATCCGCTGGC ACGCGCCGTG
ATGGCGGCTG CCGCGCAGCG TGGCCTGCAG CCGCCGCCGT TGAGCGCGAT GCAGGCGATG
CCGGGCCGCG GCGTGCGCGG CCTGGTGGAT GGCGAGCCCT GGGCCATTGC CAGCCTGCGC
TGGTGCGCGG AGCTCGGCGC CATGCCCGAC GCCGCACAGC TCGAGCGCCT GCATGCGCAG
GGCGCCACGG TGTCCGCGTT GCTGCGTTTC GACGCGGCGG GCGCTGCCCG GGTGCAGGCG
CTGCTGGCCT TTGCCGACGA GCCCAAGCCC GAAGCCGCGC AAGCCATCCG CACGCTGCAT
GCACGCGGCT TGCGCGTGGT GATGATCTCG GGCGACAACC TGCGCGCTGC GCAGGCGATG
GCCGCGCGGC TCGGCATTGC GGCCGAGGAC GTGCGCGCCG AGGTGCTGCC CGCCGACAAG
GCGGCGCAGG TCAGCGCCCT GAAGAAGAAC GGCCAGGTGG TCGCGATGAT CGGCGACGGT
GCCAACGACG CACCCGCACT GGCCGCGGCC GACGTGGGCA TTGCGATGGC GCCTGCGGGC
GGCGGCACCG ACGTGGCAAT GGAAGCGGCG GGCATCACGC TGATGCGCGG CGACCTGGCG
CTCGTGGCCG AGGCGCTCGA GCTCTCGGCA CGCACGGTGG CCAAGATCCG GCAGAACCTG
TTCTGGGCCT TTGCCTACAA CGTGGCCGGG ATTCCGCTGG CCGCCTTCGG GCTGCTGAGC
CCGGTGGTGG CGGGTGCGGC GATGGCGTTG TCGAGCGTCA GCGTGATGGC CAACGCGCTG
CTGCTGCGGC GCTGGAAGCC CTGA
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| Protein sequence | MDNLLHNLHD PMSTLDLSVG GMTCASCVMR VERALKNVPG VQDVSVNLAT ESARVVTAAG
GEDMNARLRR AVRAAGYEPR AASSAADDAA ALSPWYGFGP VGVGLLLSIP LLAPMLGQPF
GQDWMLAPWL QLLLAAPVQF WLGARFYRAG WHAARAGTGN MDLLVALGTS AAFGLSLWLW
WRAATGDHAG HGGMPHLYFE ASAVVITLVL LGKWLEARAK RQATSAIRAL QQLRPETAHL
VGPRGESDVP LAEVMVGDRL AVRPGERVPA DARVIEGQSE VDESMLTGEP LPVPKGPGDA
LTGGAVNGDG RMVVEVSAVG AESVLARIIR LVEDAQAAKA PIQRLVDQVA AVFVPVVLAI
ALATLAGWLL AGAGIELAMI HAVAVLVIAC PCALGLATPV AVMAGTGVAA RRGILIKDAR
ALELAHRVGT VAFDKTGTLT LGRPVLTALV PVAGGGDEAA LLAIAASLQG GSEHPLARAV
MAAAAQRGLQ PPPLSAMQAM PGRGVRGLVD GEPWAIASLR WCAELGAMPD AAQLERLHAQ
GATVSALLRF DAAGAARVQA LLAFADEPKP EAAQAIRTLH ARGLRVVMIS GDNLRAAQAM
AARLGIAAED VRAEVLPADK AAQVSALKKN GQVVAMIGDG ANDAPALAAA DVGIAMAPAG
GGTDVAMEAA GITLMRGDLA LVAEALELSA RTVAKIRQNL FWAFAYNVAG IPLAAFGLLS
PVVAGAAMAL SSVSVMANAL LLRRWKP
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