| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0027 |
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| Symbol | |
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| ID | 7973985 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 29660 |
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| End bp | 30442 |
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| Gene Length | 783 bp |
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| Protein Length | 260 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644790629 |
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| Product | two component transcriptional regulator, winged helix family |
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| Protein accession | YP_002941956 |
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| Protein GI | 239813046 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCTTCA AACCGCGGAT CCTGATCGCC GAAGACGAAT CGGGCATTGC CGACACCCTC
CAGTACGTGC TCAAGAGCGA TGGCTTCACG CCGGTCTGGT GCGCCACGGC CGAAGACGCC
ATCGCGCAAT TCGCGCAGGA GCCGCCAGCG CTCGCGATCC TGGATGTCGG CCTGCCCGAC
CTCAACGGCT TCGAGCTGTT CAAGCGGCTG CGCGCGCTGA ACCAGTCGCA GGGCGGCGCC
GAGGTGCCGA TGCTGTTTCT CACGGCGAGG AGCGACGAGA TCGACCGCGT GGTGGGGCTG
GAACTCGGTG CCGACGACTA CATCGCCAAG CCCTTTTCGC CGCGCGAGCT GGTGGCGCGG
GTGCGCACCA TCCTGCGGCG CAGCGCACGA GCGGGCGCTG GAGGGGCCGC GGGCCCCGGC
GATGGGGTAC CCCCTCGAAT TCCGGGCGCG GCGCCTCCAG CGACCGCCCA GCCCCCCGCA
ATGCCGTTTG CGCTGGACAA CGAGCGCATG CAGATCCGCT ACTACGGACG CCTGCTCGAG
CTCTCGCGCT ACGAATACGG GCTGCTGCGC CTGCTGGTCC AGCGGCCCGG ACGCGTGTTC
ACGCGCGACG AGCTGCTGCA GATGGTCTGG GATGACGCGA GCGACAGCTT CGACCGCACG
GTCGATGCGC ATGTGAAGAC CCTGCGCGCC AAGCTCAAGG CCGTGGCGCC CGAGGTGGAG
CCGATCCGCA CGCTGCGCGG CACCGGCTAT GCGCTGAACG AAGAACTGCC CCAGACGCCG
TGA
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| Protein sequence | MSFKPRILIA EDESGIADTL QYVLKSDGFT PVWCATAEDA IAQFAQEPPA LAILDVGLPD
LNGFELFKRL RALNQSQGGA EVPMLFLTAR SDEIDRVVGL ELGADDYIAK PFSPRELVAR
VRTILRRSAR AGAGGAAGPG DGVPPRIPGA APPATAQPPA MPFALDNERM QIRYYGRLLE
LSRYEYGLLR LLVQRPGRVF TRDELLQMVW DDASDSFDRT VDAHVKTLRA KLKAVAPEVE
PIRTLRGTGY ALNEELPQTP
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