| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0024 |
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| Symbol | |
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| ID | 7973982 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 25121 |
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| End bp | 27529 |
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| Gene Length | 2409 bp |
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| Protein Length | 802 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644790626 |
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| Product | penicillin-binding protein, 1A family |
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| Protein accession | YP_002941953 |
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| Protein GI | 239813043 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG5009] Membrane carboxypeptidase/penicillin-binding protein |
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| TIGRFAM ID | [TIGR02074] penicillin-binding protein, 1A family |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGACGATT CTTCTCCCTC CGCCGAGCCC GCGCGCTCGC AGCGTTCAGT GAAGCTGCGG
CGCGCGGCGC GGTGGAGCGC CATCGCGCTC GGCTGCGGCG CGCTGGTGCT GCTGGTGGCC
GCCGTCGTTG CGGTGGCCTC CATCTATCCC CGGCTGCCCG ACATTTCCGA GCTGGCCGAC
TACCGGCCCA AGCTGCCCCT GCGCGTGTAC ACGGTCGAAG GCACGCTGAT CGGCGAGTTC
GGCGAAGAGC GCCGCATGCT CACGCCCTTT GCGAGCATTC CCAAGGTCAT GAAGGACGCC
GTGCTCGCGG TGGAAGACGC GCGCTTCTAC GACCACGGCG GCGTCGACTA CAAGGGCTTC
GCGCGCGCGG CCGTGGCCAG CCTCAAGGGC GGCCGCAAGC AGGGCGCCTC GACCATCACG
ATGCAGGTGG CGCGCAACGT CTACCTGAGC TCCGAACGCA CGCTGAGCCG CAAGGCCTAC
GAGATATTGC TGGCGCTGCG CCTGGAGCAG CAGCTCAGCA AGGACCAGAT CCTGGAGATC
TACCTGAACC AGATCTACCT GGGCAACCGC GCCTATGGTT TTGCCGCCGC ATCGGAAGCG
TATTTCGGCA AGCCGCTACA GAACGTCACG CTGGCCGAAG CCGCCATGCT GGCCGGCCTG
CCCAAGGCGC CCGGCGCCAA CAACCCGGTG GCCAATCCGC GGCGCGCCCG CGCCCGCCAG
CTCTACGTGA TCGACCGCAT GCACGAAACC GGCTTCATCA CCGCCGAGCA GGCGGCCGAG
GCCAAGAAGG AAGAGCTGCA CCTGCGCGAT GCCGCCGACC CGGAGCGGCT GCATGCGGAA
TACGTGGCCG AGACGGTGCG CCAGATGATG TACGCGCAGT ACGGCGACAG CATCTATACC
AGCGGCATGA AGGTCTACAC CTCGCTGGTC GCGGCCGACC AGGCGGCGGC CTACAGGTCG
CTGCGCAAGG GCATCATGGA CTACGAGCGG CGCCAGCCCT ATCGCGGGCC CGAGCGCTTC
GTCGACCTGC CGGACGATCC CAAGGAAGTC GACGAGGCGG TGGACGACGC GCTGGCCGAG
CATCCCGACA ACGGCGACGT GATGGCCGCG GTGGTGCTGG AGGCCGGCAG CAAGGAAATC
AACGCGGTGC GCGCGAACGG CGAAACCGTG CAGATCACCG GCGAAGGCCT CCGGCCTGCG
CAGTCGGGCC TTGCGGCGAA GGCGCCGCCG CACATCAAGA TCCGTCGCGG CGCGGTGATC
CGCGTGGCCC GCACGCCGAA GAACACCTGG GAGATCACGC AGCTGCCCGA AGTGGAGGGC
GCCTTCATCG GCATGGATCC GCGCAGCGGC GCCATCAAGT CGCTGGTGGG CGGCTTCGAC
TTCGGCAAGA ACAAGTTCAA CCACGTGACG CAGGCCTGGC GCCAGCCGGG CTCGAGCTTC
AAGCCCTTCA TCTATTCGGC CGCGCTCGAA AAAGGCTTCA CGCCCGCGAC CATCGTCAAC
GACGCGCCGC TGCACTTCGA GCCGGGCACC GCGGGCGGCC AGCCCTGGGA ACCGAAGAAC
TTCGATGGCG GCTTCGAAGG GCCGATGCCG CTGCGCACCG CGCTCATGAA GTCGAAGAAC
CTGGTGACGG TGCGCCTGCT GCAGGCCATC GGCGCGCCGT ATGCGCAGGA GTGGATCACC
CGCTTCGGCT TCGACAAGGA CAAGCACCCG GCCTACCTGC CGATGGCACT GGGCGCCGGT
TCGGTCACGC CGATGCAGAT GGCCACGGCG TACTCGGTGT TCGCCAACGG CGGCTACAAG
GTCAATCCGT ACCTCGTCAC GCGCATCACC GACCTGCGCG ACAAGGTGCT GGTCGAGACC
GAGCCGCCGG TGCTCGACGA AAGCCGCCGC GCCATTCCCG AGCGCAACGC CTTCATCATG
GATTCGCTGT TGCAGAGCGT GGTGAAGGGC GGCACCGCCG CGCGCGCCTA CCAGGCGCTC
AAGCGCGACG ACCTGTTCGG CAAGACCGGC ACCACCAACG ATTCCTTCGA CACCTGGTTC
GCGGGCTTCC AGCCCACCAC CGTGGGCATT GCATGGATCG GCTACGACAC GCCGCGCCAG
CTGGGCGTGC GCGGCGAAAC CGGCGGCAGC CTGAGCCTGC CGATCTGGAT CGGCTACATG
CAGGCCGCGC TCAAGGGCGT GCCGGTCAGC AAGATGGCCG AGCCGCCGGG CGTCGTCAAC
ATCGACGGCG AGTGGTACTT CGACGACTTC ACCCCAGGCC ACAGCGTGGC CAGCCTGGGC
GTGGAGAGCG AGCCGCCGCC GGTGCCGGCC GAAGAACTCA CGGGTGTGCC GCCGGCCGCC
GTCCCGGTGC CGCTGGGCCC GCCGCCGCAG CCCGAAGAGC GCAACCGCAT CCTCGATTTC
TTCCGCTGA
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| Protein sequence | MDDSSPSAEP ARSQRSVKLR RAARWSAIAL GCGALVLLVA AVVAVASIYP RLPDISELAD
YRPKLPLRVY TVEGTLIGEF GEERRMLTPF ASIPKVMKDA VLAVEDARFY DHGGVDYKGF
ARAAVASLKG GRKQGASTIT MQVARNVYLS SERTLSRKAY EILLALRLEQ QLSKDQILEI
YLNQIYLGNR AYGFAAASEA YFGKPLQNVT LAEAAMLAGL PKAPGANNPV ANPRRARARQ
LYVIDRMHET GFITAEQAAE AKKEELHLRD AADPERLHAE YVAETVRQMM YAQYGDSIYT
SGMKVYTSLV AADQAAAYRS LRKGIMDYER RQPYRGPERF VDLPDDPKEV DEAVDDALAE
HPDNGDVMAA VVLEAGSKEI NAVRANGETV QITGEGLRPA QSGLAAKAPP HIKIRRGAVI
RVARTPKNTW EITQLPEVEG AFIGMDPRSG AIKSLVGGFD FGKNKFNHVT QAWRQPGSSF
KPFIYSAALE KGFTPATIVN DAPLHFEPGT AGGQPWEPKN FDGGFEGPMP LRTALMKSKN
LVTVRLLQAI GAPYAQEWIT RFGFDKDKHP AYLPMALGAG SVTPMQMATA YSVFANGGYK
VNPYLVTRIT DLRDKVLVET EPPVLDESRR AIPERNAFIM DSLLQSVVKG GTAARAYQAL
KRDDLFGKTG TTNDSFDTWF AGFQPTTVGI AWIGYDTPRQ LGVRGETGGS LSLPIWIGYM
QAALKGVPVS KMAEPPGVVN IDGEWYFDDF TPGHSVASLG VESEPPPVPA EELTGVPPAA
VPVPLGPPPQ PEERNRILDF FR
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