| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0019 |
|---|
| Symbol | |
|---|
| ID | 7973977 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 18522 |
|---|
| End bp | 19796 |
|---|
| Gene Length | 1275 bp |
|---|
| Protein Length | 424 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 644790621 |
|---|
| Product | glycosyl transferase family 51 |
|---|
| Protein accession | YP_002941948 |
|---|
| Protein GI | 239813038 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0744] Membrane carboxypeptidase (penicillin-binding protein) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.00362252 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAAACAGT TTCTGCGATT CGTGATCTAC GGGCTGCTGG CCCTTGTCGT GACAACCTGC
GTTGCTATCT TCCTGATAGT AAAACTGGTG CTTGCACCGG CCGCGGGGGA GTGGAGCACC
ACGGTCGAGG CCGGCCCGCT GCGCTTTGCG GTGGGCGTGC CCACGGCGGT GCGCCTGGCC
ACGTCGTCCT GGTTCGCGCC GCGGCTGGAC GGGCATTCAT TCGACAGCCG CTTCGGCACC
CTGCACTTCG CCTGGAAGGA CGCGGCGGGC GTGCTCGAAG TGCGCTGCTC GCCCTGCAGC
GCCGAGGTTG CCGCGCTCGG CACGCAGCCG ATCGTGTTCG AAGGCCTGGT CGCCACCGTG
AAGCGCGAAG GCAACACGCT GGCCGGCACC ATCGAGGCCA CGCCGCGCAG CGCCGAGGCC
GCCGCCGTGC TCCAGGGCCA GTGGCAAGGA CAGCTGGTGC CCAAGGGCAA GGGCCTGCAG
CTCAGCGTCG ACATCAAGGA CGCGCCCATT GCCCGCTGGT ATGCCGTGCT CGCGCCCAGC
CTGCCCGAGC TGCAGCGCGC GCGCATCGGC GGCACGCTGG CGCTGCGCGG GCAGGTCATG
CTGCCCGAGG CCACGTTCGC GGTGCAGCCC ACCGTGAGCC AGTTCACCGT CGAGGGACTG
GGCACCGAAG CCATGCTGGG CGCGCGCACC AGCTGCGGCG CGCCGTCGAA GCTGGCCAAC
GACAGCTGGC TGGCGCGCGC CGTCATCGCG GCCGAAGACC AGCGCTTCTT CACCCACGCC
GGCTACGACC TGACGGAGAT CGTCGCGTCG ATCGACAACA ACCAGAAGGA AGGCCAGCCC
AAGCGCGGCG GCAGCACGCT GACGCAGCAG CTCGCCAAGA TGCTGGTGAC CGGCAGCGAC
CGCACCGCGG AACGCAAGCT GCGCGAGCTG CTCTACGCGG TCGAAATGGA ACAGACCCTG
GGCAAGGCGC GCATCCTGCA GCTCTACCTG GACAACGCGC CGTGGGGCGG CAACCTGTGC
GGCGCCGAAG CCGCCGCCCG GCGCTATTTC AAGCGTTCCG CGCGCAGCCT GGAGCCCGCG
CAGGCGGTCT GGCTCGCGTC CATGCTGCAC AAGCCGCAGG CGGTGCTCGA GCAATGGCGG
CGCGACGGAC AGATCGACCC GGACCGCACC AAGTGGGTCG CCGAGAGCGT GCGCGGCATC
AGCCGCAACC AGCGCGAGTC GCTGCTCAAG AGCGTGGCGG CTGCCAGATT CACCGCACCG
GAGGCCTTTC CATGA
|
|---|
| Protein sequence | MKQFLRFVIY GLLALVVTTC VAIFLIVKLV LAPAAGEWST TVEAGPLRFA VGVPTAVRLA
TSSWFAPRLD GHSFDSRFGT LHFAWKDAAG VLEVRCSPCS AEVAALGTQP IVFEGLVATV
KREGNTLAGT IEATPRSAEA AAVLQGQWQG QLVPKGKGLQ LSVDIKDAPI ARWYAVLAPS
LPELQRARIG GTLALRGQVM LPEATFAVQP TVSQFTVEGL GTEAMLGART SCGAPSKLAN
DSWLARAVIA AEDQRFFTHA GYDLTEIVAS IDNNQKEGQP KRGGSTLTQQ LAKMLVTGSD
RTAERKLREL LYAVEMEQTL GKARILQLYL DNAPWGGNLC GAEAAARRYF KRSARSLEPA
QAVWLASMLH KPQAVLEQWR RDGQIDPDRT KWVAESVRGI SRNQRESLLK SVAAARFTAP
EAFP
|
|---|
| |