| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0017 |
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| Symbol | |
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| ID | 7973975 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 16817 |
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| End bp | 17716 |
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| Gene Length | 900 bp |
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| Protein Length | 299 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644790619 |
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| Product | Pirin domain protein |
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| Protein accession | YP_002941946 |
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| Protein GI | 239813036 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1741] Pirin-related protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00905247 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGAATG CAAACCACCA CGCCAACCAC CCGACCGATC CCGTGGCCAC GCCGCGCGGC
ATCGACCACA TCGTGGCCGG TGTTTCCACC AGCGATGGCG ACGGCGTCAA GCTCACCCGC
GTGCTGCAGC AGCCGCTGCA GAAAAGGCTC GACCCCTACC TGATGCTCGA CGCCTTCGGC
AGCGACAACC CGGGTGACTA CATCGGCGGC TTTCCCAGCC ATCCGCACCG CGGCTTCGAA
ACCGTGACCT ACATGATCGC GGGCCGCATG CGGCACCGCG ACAGCGCCGG CCACGAAGGG
CTGCTGCAGA ACGGCGGCGT GCAATGGATG ACGGCCGGCC GCGGCCTCGT CCACAGCGAA
CTGCCCGAGC AGGAGGACGG CCTGATGGAA GGCTTCCAGC TCTGGCTCAA CCTGCCGGCC
AAGGACAAGA TGCGCGAGCC CTGGTATCGC GACATCCAGA GCGAGGAGAT TCCGGAATAC
ACCACCGCCG CGGGCGTGCA CGTGCGCGTG ATCGCGGGCG CGAGCCACGG CATCGAGGGC
GCGGTGCGGC GCGAGCACAC CGAGCCGCTC TACCTCGACA TCACGCTGCC GCCCGGCGCC
GAGTTCGCCC AGCCCCTGCC CGACGACCAC AACGCGCTCG TCTATGCGTT CCGCGAGTCG
GTGTGGATCG CGGGCAGCGA GGTGCCCACG CGCCGCATGG CCATTCTGGC GAACGATCCC
GGCAGCGACG GCGTGGTGCT GCGCGCCGGG GCCACCAACC ACAGCCCGGC GCGCGCGCTG
CTGATTGCCG GCAAGCCGCT GCACGAACCG ATCGCGCAGT ACGGCCCCTT CGTGATGAAC
ACGCAGGAGC AGCTGAAGGA GGCCGTGCAG GACTTCCAGA GCGGCAAGTT CGGCGCCTGA
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| Protein sequence | MTNANHHANH PTDPVATPRG IDHIVAGVST SDGDGVKLTR VLQQPLQKRL DPYLMLDAFG
SDNPGDYIGG FPSHPHRGFE TVTYMIAGRM RHRDSAGHEG LLQNGGVQWM TAGRGLVHSE
LPEQEDGLME GFQLWLNLPA KDKMREPWYR DIQSEEIPEY TTAAGVHVRV IAGASHGIEG
AVRREHTEPL YLDITLPPGA EFAQPLPDDH NALVYAFRES VWIAGSEVPT RRMAILANDP
GSDGVVLRAG ATNHSPARAL LIAGKPLHEP IAQYGPFVMN TQEQLKEAVQ DFQSGKFGA
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