| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0001 |
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| Symbol | dnaA |
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| ID | 7972736 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 37 |
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| End bp | 1416 |
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| Gene Length | 1380 bp |
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| Protein Length | 459 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 644790603 |
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| Product | chromosomal replication initiation protein |
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| Protein accession | YP_002941930 |
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| Protein GI | 239813020 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0593] ATPase involved in DNA replication initiation |
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| TIGRFAM ID | [TIGR00362] chromosomal replication initiator protein DnaA |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0624121 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCCACTG ACGGCATCGG CGAAAGCCTC TGGCAGGCCT GCGTCGACCA GCTCGCGCAG
GAGCTGTCCG AGCAGCAGTT CAACACCTGG ATCAAGCCCC TGACAGCGCA GGTCGCGGAC
GACCTTTCGC GCATGACGGT GTTCGTTGCC AACCGCTTCA AGCTCGACTG GATCCGGGCC
CAGTACGCCG GCAAGATCGC CGCCATGGCC GAGAAGATGT ACGGCCAGCC GGTCGCAGTT
GAGTTAGCGC TTGCTCCGCG AGAAGCGCCC GTGCGCTCTG CCCCAGTTGC CGTGCTGGCC
GAAACCGACG TGCCGCGCGA CGTGGCCGGC CCGGGCGAGG AGCCCGCCAA CGCCGGCTTC
AAGAACCGGC TGAATTCGGG CCTCACCTTC GACACCCTGG TGGAGGGCAC GGCCAACCGC
ATGGCGCGCG CCGCCGCCAT GCACGTGGCC GGCATGCCGG GCCACCTGTA CAACCCGCTG
TTCATCTACG GCGGCGTCGG CCTGGGCAAG ACCCACCTGA TGCACGCGGT GGGCAACCGG
CTGCTGGCCG ACCGCCCGGA TTCCAAAGTT CTCTACATCC ATGCCGAGCA GTTCGTCTCG
GATGTGGTCA AAGCCTATCA GCGCAAGACT TTCGACGAGT TCAAGGAGCG CTACCACTCG
CTCGACCTGC TCCTGATCGA CGATGTGCAG TTCTTCGCCA ACAAGGACCG CACGCAGGAA
GAATTCTTCA ATGCGTTCGA GGCCCTGCTG GCCAAGAAGT CGCACATCGT GATGACCAGC
GACACCTATC CCAAGGGCCT GGCCGACATC CACGAGCGGC TGGTCTCGCG CTTCGATTCG
GGCCTCACGG TGGCCATCGA GCCGCCCGAG CTCGAAATGC GCGTGGCCAT CCTGATCAAC
AAGGCGCGCG CCGAATCGGC CGAAATGCCG GAAGAAGTGG CCTTCTTCGT TGCCAAGAAC
GTGCGCTCCA ACGTGCGCGA GCTCGAAGGG GCGCTGCGCA AGATCCTGGC CTACTCGCGC
TTCAACCAGA AGGAGATCTC GATCGCCCTG GCGCGCGAGG CGCTGCGCGA CCTGCTGTCG
ATCCAGAATC GGCAGATCTC GGTCGAAAAT ATCCAGAAGA CGGTGGCCGA CTACTACAAG
ATCAAGGTCG CCGACATGTA CAGCAAGAAG CGCCCGGCCA GCATTGCGCG GCCGCGGCAG
ATCGCGATGT ACCTGGCCAA GGAGCTCACG CAGAAGAGCC TGCCCGAAAT CGGCGAGCTG
TTCGGCGGGC GCGACCACAC GACGGTGCTG CACGCGGTGC GCAAGATCTC GGGCGAGCGC
CAGCAGCTCA CCGAACTCAA CCAGCAGCTG CACGTGCTCG AGCAGACGCT CAAGGGCTGA
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| Protein sequence | MSTDGIGESL WQACVDQLAQ ELSEQQFNTW IKPLTAQVAD DLSRMTVFVA NRFKLDWIRA
QYAGKIAAMA EKMYGQPVAV ELALAPREAP VRSAPVAVLA ETDVPRDVAG PGEEPANAGF
KNRLNSGLTF DTLVEGTANR MARAAAMHVA GMPGHLYNPL FIYGGVGLGK THLMHAVGNR
LLADRPDSKV LYIHAEQFVS DVVKAYQRKT FDEFKERYHS LDLLLIDDVQ FFANKDRTQE
EFFNAFEALL AKKSHIVMTS DTYPKGLADI HERLVSRFDS GLTVAIEPPE LEMRVAILIN
KARAESAEMP EEVAFFVAKN VRSNVRELEG ALRKILAYSR FNQKEISIAL AREALRDLLS
IQNRQISVEN IQKTVADYYK IKVADMYSKK RPASIARPRQ IAMYLAKELT QKSLPEIGEL
FGGRDHTTVL HAVRKISGER QQLTELNQQL HVLEQTLKG
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