Gene Bcav_3967 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBcav_3967 
Symbol 
ID7858030 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBeutenbergia cavernae DSM 12333 
KingdomBacteria 
Replicon accessionNC_012669 
Strand
Start bp4387294 
End bp4388529 
Gene Length1236 bp 
Protein Length411 aa 
Translation table11 
GC content73% 
IMG OID643868070 
Productpyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit 
Protein accessionYP_002883970 
Protein GI229822444 
COG category[C] Energy production and conversion 
COG ID[COG1071] Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit 
TIGRFAM ID[TIGR03181] pyruvate dehydrogenase E1 component, alpha subunit 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.219579 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGACCGGCA CCGGCCTCCC GATCGCCAGC ACCAGCCCCC AGCACCGACC GCACCCCACG 
CAGGCGCCCG CCGAACCGAC CGACCAGGCC CACGCCGTCG TCGGCGACGA CGAGGCTCGC
GACACCGACG AGACGGTCCG CCTGCTCGAC GCCGAGGGTC GACGGGTCGA GAACGCCGCG
TACGCCGAGC GGATCGCGCA CCTCACCGAC GAGGACCTGC GCGGCATGTA CCGCGACATG
GTGCTCGTGC GGGCGTTCGA CAGCGAGGCC ACGTCCCTGC AGCGTCAGGG CGAGCTCGGC
CTCTGGCCGC CGAGCCTCGG GCAGGAGGGC GCGCAGATCG GCTCCGGCCG CGCACTGGCC
GCCCAGGACT ACGTCTTCCC GTCCTACCGC GAGCACGGAG TCGCGCACAC CAAGGGCGTG
GACCTGCGCC GGATCCTCCG TCTGTACCGC GGCATCGACC ACGGCGGCTG GGATCCGGCC
GAGCACAACT ACCACCTCGC CACGCTCGTG ATCGGTGCCC ACGCCCTGCA CGCCGCCGGA
TACGCGATGG GGATCCAGCG CGACGGCGAC GTCGGCACCG GCGACGCCGG CCGTGACCGC
GCCGTCGTCG CCTACTTCGG CGACGGCGCC ACCGCGCAGG GCGACGTCAA CGAGGCGCTC
GTGTTCGCCG CGACGGCGAA CGCGCCGGTC GTCTTCTTCT GCCAGAACAA CCAGTGGGCG
ATCTCGGCAC CGTCCTCGGT CCAGACGCGC GTGCCGCTCG TGCAGCGCGG TGGCGGGTTC
GGCATCCCGA GCGTGCGCGT CGACGGCAAC GACGTCCTCG CCTCGTACGC CGTCACCGCC
GAGGCGCTCG AACGTGCCCA CAGCGGAGGT GGGCCGACGT TCATCGAGGC CGTGACGTAC
CGGATGGGCG CGCACACGAC CTCGGACGAC CCGACCCGCT ACCGCGAGCA GGCCGAGGAG
GAGCGCTGGC GCGGGCGCGA CCCGATCTCG CGCCTCCGGG CGCTGCTGGA GGCCGAGGGC
CGGGCGGACG AGGCCTTCTT CGCCGAGGTC GACGCCGAGG CCGAGGCGTA CGCCGCCGAC
GTGCGCGCCT ACTGCCGGGC GCTGGAGAAG CCCGCGGCGC CCACGATGTT CGAGCACGTC
TACACCGCCG ACCACCCCCT CGTGGCGGAG GAGCGTGCCT GGTACCAGCA GTACGCCGAG
AGCTTCGAGC AGGCCGGCGT GGAGGTGGCC CGATGA
 
Protein sequence
MTGTGLPIAS TSPQHRPHPT QAPAEPTDQA HAVVGDDEAR DTDETVRLLD AEGRRVENAA 
YAERIAHLTD EDLRGMYRDM VLVRAFDSEA TSLQRQGELG LWPPSLGQEG AQIGSGRALA
AQDYVFPSYR EHGVAHTKGV DLRRILRLYR GIDHGGWDPA EHNYHLATLV IGAHALHAAG
YAMGIQRDGD VGTGDAGRDR AVVAYFGDGA TAQGDVNEAL VFAATANAPV VFFCQNNQWA
ISAPSSVQTR VPLVQRGGGF GIPSVRVDGN DVLASYAVTA EALERAHSGG GPTFIEAVTY
RMGAHTTSDD PTRYREQAEE ERWRGRDPIS RLRALLEAEG RADEAFFAEV DAEAEAYAAD
VRAYCRALEK PAAPTMFEHV YTADHPLVAE ERAWYQQYAE SFEQAGVEVA R