Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bcav_2952 |
Symbol | sdhA |
ID | 7861371 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Beutenbergia cavernae DSM 12333 |
Kingdom | Bacteria |
Replicon accession | NC_012669 |
Strand | + |
Start bp | 3293291 |
End bp | 3295093 |
Gene Length | 1803 bp |
Protein Length | 600 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 643867050 |
Product | succinate dehydrogenase flavoprotein subunit |
Protein accession | YP_002882959 |
Protein GI | 229821433 |
COG category | [C] Energy production and conversion |
COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
TIGRFAM ID | [TIGR01812] succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup [TIGR01816] succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.090106 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.000187391 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
| |
Sequence |
Gene sequence | GTGCAGACGC ACAGCTACGA CGTCGTCATC GTGGGCGCCG GGGGCGCCGG GATGCGAGCC GCGCTGGAGT CGTCCTCACG CGCCCGCACC GCCGTCCTCA CCAAGCTCTA CCCCACCCGC TCCCACACCG GTGCCGCCCA GGGCGGCATG TGCGCCGCCC TCGCGAACGT CGAGGAGGAC AACTGGGAGT GGCACACGTT CGACACCGTC AAGGGCGGCG ACTACCTGGT CGACCAGGAC GCGGCCGAGG TCATGGCGAA GGAGGCCATC GACGCGGTCC TCGACCTGGA GAAGATGGGC CTGCCGTTCA ACCGGACGCC CGACGGGAAG ATCGACCAGC GCCGGTTCGG CGGCCACACC CGCAACCACG GCGACGCCCC TGTGCGCCGT TCCTGCTACG CCGCCGACCG CACGGGCCAC ATGATCCTGC AGACCCTGTA CCAGCAGTGC GTCAAGGCCG GCGTGGAGTT CTTCAACGAG TTCTACGCGC TCGACCTCCT GCTGACCGCC GACCCGCAGG ATCCCGACGG CGACCCGCAG GTGGCCGGCG TCGTCGCCTA CGAGCTCGCC ACCGGTGAGA TCCACGTGGT GCGCGCCAAG TCGGTGGTCT TCGCCACGGG CGGCGCCGGC AAGGTGTACA AGACGACGTC GAACGCCCAC ACGCTGACCG GCGACGGCAT GGCGATCGCC TACCGCCGCG GGCTCCCGCT CGAGGACATG GAGTTCTTCC AGTTCCACCC CACGGGCCTC GCGGGCCTCG GCATCCTGCT CTCGGAGGCC GCCCGCGGCG AGGGCGCGAT CCTGCGCAAC AGCGACGGCG AACGCTTCAT GGAGCGGTAC GCGCCGACGC TGAAGGACCT CGCGCCTCGC GACGTCGTCG CCCGCGCGAT GGCGAACGAG GTGCGGGAGG GCCGCGGCGC CGGCCCGAAC AAGGACTACG TGCTGCTCGA CCTCACGCAC CTCGAGCCGG CGCACATCGA CGCGAAGCTC CCCGACATCA CCGAGTTCGC CCGCACCTAC CTCGGCGTCG AGCCGTACAC GGAACCCGTG CCGGTGTACC CGACGGCGCA CTACGCCATG GGTGGCATGC CCACCACCGT GGAGGGCGAG GTGCTGCGCA ACAACACCGA CATCGTCCCC GGGCTGTACG CCGCGGGCGA GGTGGCGTGC GTGAGCGTCC ACGGCGCGAA CCGGCTCGGC ACGAACTCGC TGCTCGACAT CAACGTGTTC GGCAAGCGGG CCGGCATCAC CGCCGCCGAG TACGCGGCCG GCGCGACGCT CGCCGAGCTC CCCGACGACC CGGCCGGGCG CGTCGTCGCC CAGCTCGAGG CGATGCGGAC GCGCCCCGTC GGCGAGAAGG TGGCCGACCT GCGCCGGGCG CTGCAGGAGA CGATGGACGT GAACGCGCAG GTGTTCCGCA CGGAGGCCAG CCTCAAGCAG GCTCTGGTCG ACATCCAGCA GCTCCAGGAG CGCTACGGCC ACGTCGCCGT GCAGGACAAG GGCCGGCGGT ACAACCTCGA CCTGCTCGAG GCCGCCGAGC TCGGCTTCCT GCTGGACCTC GCCGAGGTCG TCGTGACCGG CGCGCTCGCC CGCAACGAGT CGCGCGGCGG TCACTACCGC GAGGACTACC CGCAGCGGGA CGACACGAAC TTCATGCGCC ACACGATGGC CTACCGGGTC GCGACGACCG GTGCCGAGGG TGCCGAGGCG GTCGACGCCG CCGGGATCGG CCCGCACGAG GTGCGCCTCG ACTACAAGCC CGTCACGTTG ACCCGGTACC AGCCGATGGA GCGTAAGTTC TGA
|
Protein sequence | MQTHSYDVVI VGAGGAGMRA ALESSSRART AVLTKLYPTR SHTGAAQGGM CAALANVEED NWEWHTFDTV KGGDYLVDQD AAEVMAKEAI DAVLDLEKMG LPFNRTPDGK IDQRRFGGHT RNHGDAPVRR SCYAADRTGH MILQTLYQQC VKAGVEFFNE FYALDLLLTA DPQDPDGDPQ VAGVVAYELA TGEIHVVRAK SVVFATGGAG KVYKTTSNAH TLTGDGMAIA YRRGLPLEDM EFFQFHPTGL AGLGILLSEA ARGEGAILRN SDGERFMERY APTLKDLAPR DVVARAMANE VREGRGAGPN KDYVLLDLTH LEPAHIDAKL PDITEFARTY LGVEPYTEPV PVYPTAHYAM GGMPTTVEGE VLRNNTDIVP GLYAAGEVAC VSVHGANRLG TNSLLDINVF GKRAGITAAE YAAGATLAEL PDDPAGRVVA QLEAMRTRPV GEKVADLRRA LQETMDVNAQ VFRTEASLKQ ALVDIQQLQE RYGHVAVQDK GRRYNLDLLE AAELGFLLDL AEVVVTGALA RNESRGGHYR EDYPQRDDTN FMRHTMAYRV ATTGAEGAEA VDAAGIGPHE VRLDYKPVTL TRYQPMERKF
|
| |