| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcav_2077 |
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| Symbol | |
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| ID | 7859357 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Beutenbergia cavernae DSM 12333 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012669 |
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| Strand | - |
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| Start bp | 2355304 |
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| End bp | 2355750 |
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| Gene Length | 447 bp |
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| Protein Length | 148 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 643866171 |
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| Product | type VI secretion system effector, Hcp1 family |
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| Protein accession | YP_002882094 |
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| Protein GI | 229820568 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3157] Hemolysin-coregulated protein (uncharacterized) |
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| TIGRFAM ID | [TIGR03344] type VI secretion system effector, Hcp1 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00363318 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.388001 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGCGATCG CCGGATTCCT GAAGGTTCCC GACGTCCCGG GCGAGAGCCA CGTCGAGGGG
CACGAGGACG AGATCGAGGT GCACAGCATC AGCTTCGCGA TGGCGGCGCC TGTGGACGTC
GGCAGCCTGG CTCGGCGGGG ACGGGTGAAG TTCGAGCCCC TGACGCTCGG TAAGCGGTAC
GACCGGTCAT CGCCGTATCT GAAGAAGGCG CTGTACGACA ACATGCTGTG GGACGCCGTC
GTTCTGTCCC TCGTGCGTGC CGTTGAGGGT GAAACGAGCG CCTACGTGGT GGTACGGCTC
GCGGACGCGT CGGTCGCGGC GTACACCCTC GAGGATGCCG AGGCGCCGGA TCGCCTCGAG
GAGCAGGTGA CCCTCGTCTA CCGGTCGATC CGGTTCACGT ACGACGGTGC GCACGAGGTC
GAGTTCGACG CGGTCCCCAA CCGATAG
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| Protein sequence | MAIAGFLKVP DVPGESHVEG HEDEIEVHSI SFAMAAPVDV GSLARRGRVK FEPLTLGKRY
DRSSPYLKKA LYDNMLWDAV VLSLVRAVEG ETSAYVVVRL ADASVAAYTL EDAEAPDRLE
EQVTLVYRSI RFTYDGAHEV EFDAVPNR
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