Gene Bcav_2020 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBcav_2020 
SymbolaroK 
ID7858640 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBeutenbergia cavernae DSM 12333 
KingdomBacteria 
Replicon accessionNC_012669 
Strand
Start bp2303362 
End bp2303883 
Gene Length522 bp 
Protein Length173 aa 
Translation table11 
GC content75% 
IMG OID643866114 
Productshikimate kinase 
Protein accessionYP_002882037 
Protein GI229820511 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0703] Shikimate kinase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.0278183 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGACGCGGC CGCGCGTCGT GCTCGTCGGC CCGCCCGGAT CCGGCAAGAC GACCGTGAGC 
GCCCTGCTCG CGGCCGCGCT CGGCGTCGAC GTGCGGGACA CCGACGCGGA CGTCGAGGCC
ACGGCTGGGC GGCCGATCAC GGAGATCTTC GTGGACGACG GCGAGGACGC GTTCCGCGAT
CTCGAGCGCG CCGCGGTCGC GGCCGCGCTG GCCGAGCACG ACGGGGTCCT GGCGCTCGGC
GGGGGAGCGG TCCTGGACGC CGGGACCCGC GCGAAGCTCG CCGAGCACAC GGTGGTGTAC
CTCGAGGTGT CGCTCACGAG CGCGGCGCCG CGGGTCGGTC TCGACCGGTC CCGGCCCCTG
CTGCTCGGCA ACCCGCGCGC GCAGTGGAAG AAGCTGATGG ACGCACGCCG TCCCCTGTAC
GAGGAGGTCG CCGCGATCAG CGTGAGCACC GACTCCAAGT CCCCGGACGA CGTCGCCGCG
GAGATCCTCG CCGCGCTCGG CCGGGCGGAG GCGGCACGAT GA
 
Protein sequence
MTRPRVVLVG PPGSGKTTVS ALLAAALGVD VRDTDADVEA TAGRPITEIF VDDGEDAFRD 
LERAAVAAAL AEHDGVLALG GGAVLDAGTR AKLAEHTVVY LEVSLTSAAP RVGLDRSRPL
LLGNPRAQWK KLMDARRPLY EEVAAISVST DSKSPDDVAA EILAALGRAE AAR