Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bcav_1960 |
Symbol | |
ID | 7858353 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Beutenbergia cavernae DSM 12333 |
Kingdom | Bacteria |
Replicon accession | NC_012669 |
Strand | - |
Start bp | 2234728 |
End bp | 2236851 |
Gene Length | 2124 bp |
Protein Length | 707 aa |
Translation table | 11 |
GC content | 74% |
IMG OID | 643866050 |
Product | 3-hydroxyacyl-CoA dehydrogenase NAD-binding |
Protein accession | YP_002881977 |
Protein GI | 229820451 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1250] 3-hydroxyacyl-CoA dehydrogenase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.502183 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.0000170947 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGAGCACGA CCACCACCAC CGACCGCGCC GAGCGTGTCA CGCACTCCCT GGTCCGCGAC GTCGCCCTGC CCGGCGGCGC CGGGACGCTC GCGCTCGTCA CGCTGGACAA CGGCTTCGAC CACACCAAGC CCAACACGCT CGGTCCCGAC GGCATCCGCG AACTGCACGC AGCGCTCGAG GCCCTCCAGG CCCGTGCGCG TGCCGGCGAG ATCGCGGCCG TCGGCGTCAC CGGAAAGCCG TACGTGCTCG CCGCCGGAGC GGACCTCACG CAGGCCTCCG CCGTCGCGAC CCGCGACGCC GCCCTGCAGC TCGGTCGGTC CGGGCACGCC GCGTACCGCC TGCTCGGCGA GATGGGCGTC CCGACGTTCG CGTTCGTCAA CGGCGTCGCG CTGGGCGGCG GTCTCGAGGT GGCGCTGAAC TGCGACTACC GGACGGCGGC AGGATCCGTG CGGGCGCTCG GGCTTCCTGA GGTCGGCATC GGTCTGATCC CGGGTTGGGG CGGGGCCTAC CTCGTGCCGC GTCTGGTGGG CATCGAGCAG GCGATCGACG TCGTGCTGAC CCGCCCGAGC GCGAACAAGC CGTACTCCGC AGCCGAGGCC GGAAAGCTCG GCCTCGTGGA CGTCGTGCTC GACGACGCCG ACTTCCTCGC CGAGTCGATC CGGTGGGCGG CACGGGTGCT GGGCGGCGAC GTCGTCGTGC CGCGCCGAGA CCTCGACCCG CCCGAGGTGT GGGACGCCGT CGTCCACGCC ACTCGCCAGC GGCTCGACGC CGTCGTCCGC GGCTCGCGGC CCGCCCCGTA CCGCGCCCTC GACCTCCTCG CCGCCGCACG CACGGCGACG AAGGACGAGG CGTTCGCCGC GGAGGACGAG GCCCTCGCCG ACCTCATCAT GAGCGACGAG ATGCGGGCGA GCGTGTACGC GTTCCAGCTC GTGAGCCGGG CCAAGCGTCC GGCCGGCGCG CCCGACCCGG CACTGGCGCG GAAGGTGACT CGAGTCGGGA TCATCGGGGC GGGCCTCATG GCGGCCCAGA TCGCCCAGCT CGTGGCCCAG CGCCTCAAGG TGCCCGTGGT GATGCGGGAC CTCGACGACG AGCGGGTCGC CGCCGGGCTC GGGCACGTCC GTGCGAGCGT CGAGAAGCTC GCCGGGTCCG GGCGGATGCC GGCCGACGCC GCCGCGCGCC TCGTGGGGTC GATCACGGGC ACGACCGACC TGGCCGACCT GGCCGGCTGC GACCTCGTGA TCGAGGCGGT GACGGAGCGG CTCGACCTCA AGAAGCGGGT CTTCGCGGAG ATCGAGCCGG TCGTCGGACC CGACGCGATC CTCGCCACGA ACACGTCGGC GCTCTCCGTC ACGGCGATGG CCGCCGATCT CGCCCACCCC GAGCGCGTCG TCGGCCTGCA CTTCTTCAAC CCGGTGCACG CGATGCCGCT GGTCGAGGTC GTCCGTGCCG AGCGCACCTC CGACGAGGCG CTGGCCACGG CGTTCGCCGT CTGCGCAGGG CTGCGGAAGA CCGCCGTCGG CGTCGCCGAC CGACCCGGCT TCGTCGTCAA CCGCCTGCTC GTCCTCCTCC TGGGGAAGGT CGTGGAGGCG GTCGAGAACG GGACGCCGGT CGAGGTGGCG GACCGCTCGC TCGACCCGCT CGGCCTCCCG ATGCCGCCGT TCGAGCTGTT CGACCTCGTC GGGCCCGCCG TCGGCCTGCA CGTGCTGACG TCGCTGCGCG AGGACCTCGG CGAGCGGTTC CCGGCTTCCG CCGGGCTCGA GCGGATCGTC GCCGACGGCG TCCCGGTGGT CGGCGCCGCG CCGGCGAAGG GGCTGCCGAA GCCGGTGGAC CCGGCGCTGC AGGCGGTGTT CGACGCCGTC CGCCCGGCGG GAGCGACGGC GTCACCGCGC GACGCGGCGG GCGTGCTGGA CGACGTCCTC CAGGCCCTGA CGACGGAGGT CGGCCTCATG CTCGACGAGG GCGTGGTGGG ATCGCCCGAC CAGATCGACC TGTGCATGAT CCTCGGCGCC GGGTGGCCGT TCCACCTCGG CGGCATCACG CCGTACCTGG ACCGCGCCGG CTACTCCGAG CGGGTGCTGG GGCGGCGTCT CCTGCCCGAC GGCGTGGCGA ACGCTCCGCG CTGA
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Protein sequence | MSTTTTTDRA ERVTHSLVRD VALPGGAGTL ALVTLDNGFD HTKPNTLGPD GIRELHAALE ALQARARAGE IAAVGVTGKP YVLAAGADLT QASAVATRDA ALQLGRSGHA AYRLLGEMGV PTFAFVNGVA LGGGLEVALN CDYRTAAGSV RALGLPEVGI GLIPGWGGAY LVPRLVGIEQ AIDVVLTRPS ANKPYSAAEA GKLGLVDVVL DDADFLAESI RWAARVLGGD VVVPRRDLDP PEVWDAVVHA TRQRLDAVVR GSRPAPYRAL DLLAAARTAT KDEAFAAEDE ALADLIMSDE MRASVYAFQL VSRAKRPAGA PDPALARKVT RVGIIGAGLM AAQIAQLVAQ RLKVPVVMRD LDDERVAAGL GHVRASVEKL AGSGRMPADA AARLVGSITG TTDLADLAGC DLVIEAVTER LDLKKRVFAE IEPVVGPDAI LATNTSALSV TAMAADLAHP ERVVGLHFFN PVHAMPLVEV VRAERTSDEA LATAFAVCAG LRKTAVGVAD RPGFVVNRLL VLLLGKVVEA VENGTPVEVA DRSLDPLGLP MPPFELFDLV GPAVGLHVLT SLREDLGERF PASAGLERIV ADGVPVVGAA PAKGLPKPVD PALQAVFDAV RPAGATASPR DAAGVLDDVL QALTTEVGLM LDEGVVGSPD QIDLCMILGA GWPFHLGGIT PYLDRAGYSE RVLGRRLLPD GVANAPR
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