Gene Bcav_1957 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBcav_1957 
Symbol 
ID7858350 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBeutenbergia cavernae DSM 12333 
KingdomBacteria 
Replicon accessionNC_012669 
Strand
Start bp2229798 
End bp2231867 
Gene Length2070 bp 
Protein Length689 aa 
Translation table11 
GC content77% 
IMG OID643866047 
ProductAmylo-alpha-16-glucosidase 
Protein accessionYP_002881974 
Protein GI229820448 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG3408] Glycogen debranching enzyme 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.705949 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0000163059 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
GTGGCAACGC AGGTCGGGAC ACCTCGGCAG CCGTTCCTGG ACTCGTTGGT CGTGGCCCTG 
GCCGCGCCGA CCCAGGCCTG GTCGGGAGCG GACGGGCAGA TCCGGCACGG CGGCGCCCAC
GGTGTCTTCC ACGGTGACGT GCGCGCCCTC GCCCGCGCCG AGCTGCTGGT CGCCGGCGAG
GAGCCCGAGG TGATCGCGGC GGGTCCGCAG GGCCGCGGCC GCGTGCACGT CGTCGCCCTC
GCGCGGGGGA TCGACGCCGC GGGGGCCGAT CCCACGGTGC GCCTCGACCG GGTGCGCCGG
GTGGAGCCCG GCGCCGTGCG CGAGGACATC ACCGTGACGT GTGCCGTGCC GGGCACCGCC
AGGGGTCGCC TCGAGATCGT CCTCGGCAGC GATCTCGCGG ACATGGACGC CGTGAAGGCC
GGGCGGACCC CGGCTCTTCT CCCGGTGCAC GCTGACGGCG ATCGCCTCAC CTGGGCCGCG
GCCGGGGTGA GCGTCGCTGT GGAGGCGCCC GGCGCCGTCG TCGACGCGCG GGACCTCGCC
GCTCCCCGGA TCGCCTGGGA CGTCGAGGTC ACGCAGCGCG CACCGGTGAC GCTCTCGTGG
ACCCTGACGG CCACGGACTC CGCCGCCGTC GTCGTCCCCG CCCGAGGCCC GGTGCCGTGG
TCAGCACCCA CGCTCGAGGC GGACGACCAC CGCCTCGCTC CGTGGCTCGA ACGCTCGCTG
GAGGACCTGG CGAGCCTGCG CATGGCGACG ACCGAGCTGC CCGACGACGA GTTCCTCGCG
GCCGGCGCGC CGTGGTTCTT CACGTTGTTC GGCCGCGACT CCCTGTGGGC AGCGCGCATG
CTGCTCCCGC TGGGCACCGG ACTGGCCCGC GGCACGCTCC GCACGCTCGC GGCCGGCCGC
GGCCGCCGGG AGGACGCGGC GACGGGTGAG CAGCCGGGCA AGGTGCTGCA CGAGGTGCGT
CGTGCCGGCA TCGGGATCGA CGACGGCGCC CGCCTGCCAC CGGTGTACTT CGGCACCATC
GACGCCACCC CGTTGTGGAT CGTGCTCCTG CGCGACGCCT GGCGCTGGGG CCTGCCGGCC
GACGACGTCG CCGAGCTGCT GCCGGCCCTG GAGGACACGC TCGGCTGGCT CGACGCCCAG
GTCTCCGACT CCGACGGCGT CGCGGGCTTC CTGCGGTACG AGGACCGGAC GGGGGCCGGG
CTCGCGAACC AGGGCTGGAA GGACTCGGGC GACTCCGTGC AGTGGCGCTC CGGCGAGCTG
GCGCAGCCGC CGATCGCGCT GGCCGAGGTG CAGGCGTACG CGTACGAGGC GGCGCTGGCG
GGAGCCGAGC TGCTGGCGGC GTTCGACCGT CCGGGCGCCG ACGCGTGGCG GGACTGGGCG
GACCGGCTCG CGCGGCGGTT CCGGTCGGCG TTCTGGGTCA CCGTCGACGG CGAGCGGTAT
CCGGCGATCG CGCTCGACGC GACCGGCAGC GCCGTCGACA GCTTGACGTC GAACCTCGGC
CACCTCCTCG GGACGGGCCT GCTCGACGCC GACGAGGAGC GGGTCGTGGC CTCGCACCTC
ACCGACCCGC GCCTGGACTC CGGCTACGGC CTGCGCACGC TGGCGGCGGG CTCCGGAGGG
TACTGGCCGC TGCGCTATCA CGGGGGTGCC GTCTGGCCCC ACGACACGGC GATCGCCGTG
CGCGGGCTCG CGCGTGCGGG GTTCGCCGCG GAGGCCGAGC ACCTGGCGTC GGGCCTCGTC
CGTGCCGCTC CCGACCTCGA CTACCGCCTG CCCGAGCTGT GGTCCGGCGA CGCCGCGGGC
ACCGTGCCCA CCGTCGTGCC GTACCCGGCC GCGTGCCGCC CGCAGGCGTG GTCGGCGGCC
GGGGCCGTCG CGGTGCTGCA GTCGGTCCTC GGGATCGAGG CGGACGTCCC GGCGGGTGTC
GTGCGGGTGC GGGCCCGCCC CGGACCGCTC GGCGCCCTGG CGTGGGGCGG GCTGCGCGCC
GGGAACGGGG TGCTCGACGT CGCCCGGGCG GCCGACGGCC GGGTGACGGC TCGTGCGGAG
GGCGACGGCG TCGAGGTTCG CGTGGAGTGA
 
Protein sequence
MATQVGTPRQ PFLDSLVVAL AAPTQAWSGA DGQIRHGGAH GVFHGDVRAL ARAELLVAGE 
EPEVIAAGPQ GRGRVHVVAL ARGIDAAGAD PTVRLDRVRR VEPGAVREDI TVTCAVPGTA
RGRLEIVLGS DLADMDAVKA GRTPALLPVH ADGDRLTWAA AGVSVAVEAP GAVVDARDLA
APRIAWDVEV TQRAPVTLSW TLTATDSAAV VVPARGPVPW SAPTLEADDH RLAPWLERSL
EDLASLRMAT TELPDDEFLA AGAPWFFTLF GRDSLWAARM LLPLGTGLAR GTLRTLAAGR
GRREDAATGE QPGKVLHEVR RAGIGIDDGA RLPPVYFGTI DATPLWIVLL RDAWRWGLPA
DDVAELLPAL EDTLGWLDAQ VSDSDGVAGF LRYEDRTGAG LANQGWKDSG DSVQWRSGEL
AQPPIALAEV QAYAYEAALA GAELLAAFDR PGADAWRDWA DRLARRFRSA FWVTVDGERY
PAIALDATGS AVDSLTSNLG HLLGTGLLDA DEERVVASHL TDPRLDSGYG LRTLAAGSGG
YWPLRYHGGA VWPHDTAIAV RGLARAGFAA EAEHLASGLV RAAPDLDYRL PELWSGDAAG
TVPTVVPYPA ACRPQAWSAA GAVAVLQSVL GIEADVPAGV VRVRARPGPL GALAWGGLRA
GNGVLDVARA ADGRVTARAE GDGVEVRVE