| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcav_1838 |
|---|
| Symbol | |
|---|
| ID | 7860460 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Beutenbergia cavernae DSM 12333 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012669 |
|---|
| Strand | + |
|---|
| Start bp | 2098050 |
|---|
| End bp | 2099723 |
|---|
| Gene Length | 1674 bp |
|---|
| Protein Length | 557 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 643865929 |
|---|
| Product | urocanate hydratase |
|---|
| Protein accession | YP_002881856 |
|---|
| Protein GI | 229820330 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2987] Urocanate hydratase |
|---|
| TIGRFAM ID | [TIGR01228] urocanate hydratase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.227163 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.0359313 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACGGAG CACGCGAGGT GAGGTCCCCG CGCGGGAGCA CGCTCACCGC CCGCAGCTGG
CAGACCGAGG CACCGCTGCG GATGCTGATG AACAACCTCG ACCCGGACGT GGCCGAGCGC
CCGGACGACC TCGTGGTCTA CGGCGGCACG GGCCGCGCCG CCCGCGACTG GGCGAGCTAC
GACGGGATCG TCCGCACGCT CACGACGCTG GGTGACGACG AGACGCTGCT CGTGCAGTCC
GGTCGGCCCG TCGGCGTGCT GCGGACGCAC GAGTGGGCGC CGCGCGTGCT CATCGCGAAC
TCGAACCTCG TGCCCGACTG GGCCACGTGG CCCGAGTTCC GCCGGCTCGA GCACCTCGGG
CTCACGATGT ACGGCCAGAT GACGGCCGGG TCGTGGATCT ACATCGGCAC CCAGGGGATC
CTGCAGGGCA CATACGAGAC GTTCGCCGCC GTCGCCGAGA AGGTGGGGCG GCCCGACGAC
GACGGCGTCG CATCCCTGGC CGGGACGCTC ACCCTGACGG CGGGGTGCGG CGGCATGGGC
GGCGCGCAGC CGCTCGCGGT GACGCTCAAC GGCGGGGTGT GCCTCGTGGT GGACGTCGAC
CCGGAGCGCC TCCGCCGCCG CGTCGCGACC CGCTACCTCG ACGAGGTGGC CGACGGCCTG
GACGACGCCG TCGCCCGCTG CGAGGCGGCG AAGCTGGAGC GGCGCGCCCT GTCGGTGGGG
CTCGTCGGCA ACGCGGCGAC CGTGTACCCC GAGCTGCTGC GCCGCGGCGT CGAGATCGAC
GTCGTCACCG ACCAGACGTC GGCGCACGAC CCGCTGTCCT ACCTGCCCGA GGGCGTCGAG
CTCGGGGAGT GGCACGAGGC CGCCGAGGCC AAGCCCGAGG AGTTCACGGA CCGGGCGCGC
GAGTCGATGG CGCGGCAGGT CGCGGCCATG GTCGGGTTCC TCGACGCGGG CGCCGAGGTG
TTCGACTACG GCAACTCGAT CCGCGACGAG GCCCGGCAGG GCGGGTACGA CCGCGCCTTC
GCCTTCCCCG GCTTCGTCCC CGCGTACATC CGCCCGCTCT TTAGCGAGGG CAAGGGCCCG
TTCCGCTGGG CCGCGCTCTC CGGCGACCCG GCCGACATCG CCGCCACCGA CCGCGCCGTC
CTCGACCTCT TCCCGGACGA CGCGAAGCTG CACCGGTGGA TCCGCGCCGC CGGCGAACGC
GTCGCGTACC AGGGCCTTCC CGCGCGGATC TGCTGGCTCG GGTACGGAGA GCGGCACCTG
GCCGGCCTGC GGTTCAACGA GATGGTCGCG AGCGGCGAGC TCTCGGCCCC GATCGTCATC
GGCCGCGACC ACCTCGACGC CGGCTCGGTC GCCTCGCCGT ACCGCGAGAC GGAGGCCATG
GCCGACGGCT CCGACGCCAT CGCCGACTGG CCGCTCCTCA ACGCGCTCGT CAACACGGCG
TCCGGGGCCA CGTGGGTCTC GATCCACCAC GGCGGCGGCG TCGGGATCGG GCGCTCGATC
CACGCGGGGC AGGTCAGCGT CGCGGACGGC ACCGAGCTGG CCGCCGCCAA GCTCGAACGC
GTCCTCACGA ACGACCCCGG GATGGGCGTC ATCCGGCACG TCGACGCCGG GTACGCGCGC
GCTGACGAGG TCGCCGCGGA GCGGGGCGTG CGGGTCCCGA TGCGGGAGTC CTGA
|
|---|
| Protein sequence | MDGAREVRSP RGSTLTARSW QTEAPLRMLM NNLDPDVAER PDDLVVYGGT GRAARDWASY
DGIVRTLTTL GDDETLLVQS GRPVGVLRTH EWAPRVLIAN SNLVPDWATW PEFRRLEHLG
LTMYGQMTAG SWIYIGTQGI LQGTYETFAA VAEKVGRPDD DGVASLAGTL TLTAGCGGMG
GAQPLAVTLN GGVCLVVDVD PERLRRRVAT RYLDEVADGL DDAVARCEAA KLERRALSVG
LVGNAATVYP ELLRRGVEID VVTDQTSAHD PLSYLPEGVE LGEWHEAAEA KPEEFTDRAR
ESMARQVAAM VGFLDAGAEV FDYGNSIRDE ARQGGYDRAF AFPGFVPAYI RPLFSEGKGP
FRWAALSGDP ADIAATDRAV LDLFPDDAKL HRWIRAAGER VAYQGLPARI CWLGYGERHL
AGLRFNEMVA SGELSAPIVI GRDHLDAGSV ASPYRETEAM ADGSDAIADW PLLNALVNTA
SGATWVSIHH GGGVGIGRSI HAGQVSVADG TELAAAKLER VLTNDPGMGV IRHVDAGYAR
ADEVAAERGV RVPMRES
|
|---|
| |