| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcav_1816 |
|---|
| Symbol | |
|---|
| ID | 7860438 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Beutenbergia cavernae DSM 12333 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012669 |
|---|
| Strand | + |
|---|
| Start bp | 2078754 |
|---|
| End bp | 2079755 |
|---|
| Gene Length | 1002 bp |
|---|
| Protein Length | 333 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 643865907 |
|---|
| Product | transcriptional regulator, AraC family |
|---|
| Protein accession | YP_002881834 |
|---|
| Protein GI | 229820308 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.00100464 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGCGAAGTG GTGATCCCTG GGCCAGCAGT GATCCGCTCG GTGAGGCCCT GCACTTCTTG
CGCATGTCGG GAAGCTTCTA CTGCCGATCC GAGCTCACCC CGCCGTGGGG GTTGGACCTG
CCGCCCGAGC CGGGGTCGAT GTGGTTCCAC GTCGTGAATG CGGGACGATG CTGGCTTGAC
GTCGACGGCG ACGAGCCTCG GCAGCTTCAG CCCGGCGACT TCGCCCTCGT GCCCCACGGC
GAAGGGCACC GGCTGTACAG CGAACCCGGG ACCCCGACGC CACGATTCGA CGAGCTGGAG
TATGACTGCG GTACCGAGCG GTACGCGATC CTGCGGCACG ACGGTGGAGG AGGGGGGACG
CCGACGAGCC TGGTGTGTGG CACCGTCCGG TTCGGGCACC CCGCGGCCCG CAGCCTGATG
GCGCTCTTGC CCGACGCCGT CATCATCGAC GGCGCATCGC GCTCACCCTC GCCTGAGGCC
GAGTGGATGC ACAGCACGCT CCGGCTGATC GCCGCCGAAG GCCGGCAGTT GCGGCCCGGT
GGCGAGGCCG TGATCACCCG GCTGTCCGAC ATCCTGGTGA TTCAGGCCAT CCGCGCGTGG
ATCGCGGACC ATCCCGCCGG ACACGTCGGA TGGTTGCGAG CGCTGCAGGA TCCGCGGATC
GGCAGGGCCA TGTCGTTGGT CCACCGTGAC CCTGCCAAGC CCTGGTCGGT GGCAGCCCTG
GCACGGGAGA CCGCGATGTC CCGGTCGGCC TTCGCTGCCC GCTTCACCGA GCTGGTCGGC
GAGCCCGTGA TGCACTACGT CACTCGCTGG CGGATGCAGG TGGCACTCGA CCGGCTACAA
CAGGGCGACA GCTCAGTCGG GGAGCTCGCA GCCCATCTGG GATATGAGTC GGAAGCAGCG
TTCAAGCGCG CGTTCAAACG CACGGTCGGC ATCACTCCTG GCTCCGTCCG TCGGACACCG
CCCGAGGAGC TGCTCACGTC TGCCGCCGAC GCCGGGGCCT GA
|
|---|
| Protein sequence | MRSGDPWASS DPLGEALHFL RMSGSFYCRS ELTPPWGLDL PPEPGSMWFH VVNAGRCWLD
VDGDEPRQLQ PGDFALVPHG EGHRLYSEPG TPTPRFDELE YDCGTERYAI LRHDGGGGGT
PTSLVCGTVR FGHPAARSLM ALLPDAVIID GASRSPSPEA EWMHSTLRLI AAEGRQLRPG
GEAVITRLSD ILVIQAIRAW IADHPAGHVG WLRALQDPRI GRAMSLVHRD PAKPWSVAAL
ARETAMSRSA FAARFTELVG EPVMHYVTRW RMQVALDRLQ QGDSSVGELA AHLGYESEAA
FKRAFKRTVG ITPGSVRRTP PEELLTSAAD AGA
|
|---|
| |