| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcav_1448 |
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| Symbol | rumB |
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| ID | 7860917 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Beutenbergia cavernae DSM 12333 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012669 |
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| Strand | - |
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| Start bp | 1651436 |
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| End bp | 1652566 |
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| Gene Length | 1131 bp |
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| Protein Length | 376 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 643865535 |
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| Product | 23S rRNA methyluridine methyltransferase |
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| Protein accession | YP_002881468 |
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| Protein GI | 229819942 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
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| TIGRFAM ID | [TIGR02085] 23S rRNA (uracil-5-)-methyltransferase RumB |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.305727 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCAGTGCT CCTACTACGA CGCGGCCCTG TGCCGCTCCT GCACCCTCAT CGAGCGGCCG
TACGCCGACC AGCTCGCCGG GAAGCAGGCG CACGCCCGCG CCGCGCTCAC GGGTCACGAC
GGCGTCGCGT GGCTCCCACC GCATCCGAGC GCCGAGGAGC AGTTCCGGAA CAAGGCGAAG
ATGGTCGTGA CCGGCTCGGC AGTGGACCCG GTGATCGGCA TCCTCGGCCC GGACGGCGAG
GGCGTCGACC TCCGCTGGTG CGGGCTGCAC GAGCCGCCGG TGACCGCCGC TCTGAGCCCG
TTGGCCGAGT TCGTCGCGCG CGCGAACCTC GCGCCGTACG ACCTGCGCAC GCGGCGCGGA
GAGCTGAAGT ACCTGCTCGT GACGGCGTCG CCCGACGGCG AGGTCATGGT CCGGTTCGTG
CTGCGCTCCA CCGAGGCGCT CGCGCGGATC CGCAAGCACC TGCCGGCGCT GCAGGAGGCC
CTGCCACGGC TCGCCGTCGC CTCCGTCAAC GTCCAGCCGG AGCACAGCGC CGTCCTGGAG
GGTCCGACGG AGATCCCGCT GACGCCGGCG CAGACTCTCC GCATGGCGGT GAACGGCCTC
GACCTCCACC TGCGCCCGCA GAGCTTCTTC CAGACCAACA CCGCCGTCGC CGCGGCGCTC
TACCGCGAGG CGACGGACTG GATCGACGAG CTCGCGCCGT CGAGCGTCGT CGACCTCTAC
TGCGGCGTCG GCCCCTTCGC CCTGCACGCG GCGGCGCGGG ACACCGAGCG GCGCGTGCTC
GGCGTCGAGA CCAGCGCCGA GGCGATCGCG AGCGCCACCC ACAGCGCCGC CGACGCCGGC
CTGGCGAACG CGCGTTTCGC CGTCGGCGAC GCCACGGCGT TCGCCGCCGA CGACGACGGC
GTCCCGGACG TCGTGATCGT CAACCCGCCG CGGCGCGGCA TCGGCCCCGA CCTCGCCGCG
TGGCTGGAGC GCTCAGGCGT GCGCCACGTC GTGTACTCGA GCTGCAGCTC CGCCTCGCTC
GCGCGTGACC TGGCGGTCAT GCCGTCACTT CGCCCCGTGC GCGCCCGCGT GCTCGACATG
TTCCCGCAGA CCGCGCACTA CGAGGTGCTG ACGCTCCTCG AGCGAGGCTG A
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| Protein sequence | MQCSYYDAAL CRSCTLIERP YADQLAGKQA HARAALTGHD GVAWLPPHPS AEEQFRNKAK
MVVTGSAVDP VIGILGPDGE GVDLRWCGLH EPPVTAALSP LAEFVARANL APYDLRTRRG
ELKYLLVTAS PDGEVMVRFV LRSTEALARI RKHLPALQEA LPRLAVASVN VQPEHSAVLE
GPTEIPLTPA QTLRMAVNGL DLHLRPQSFF QTNTAVAAAL YREATDWIDE LAPSSVVDLY
CGVGPFALHA AARDTERRVL GVETSAEAIA SATHSAADAG LANARFAVGD ATAFAADDDG
VPDVVIVNPP RRGIGPDLAA WLERSGVRHV VYSSCSSASL ARDLAVMPSL RPVRARVLDM
FPQTAHYEVL TLLERG
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