Gene Bcav_1280 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBcav_1280 
Symbol 
ID7858743 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBeutenbergia cavernae DSM 12333 
KingdomBacteria 
Replicon accessionNC_012669 
Strand
Start bp1454904 
End bp1456271 
Gene Length1368 bp 
Protein Length455 aa 
Translation table11 
GC content75% 
IMG OID643865365 
Productdiaminopimelate decarboxylase 
Protein accessionYP_002881302 
Protein GI229819776 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0019] Diaminopimelate decarboxylase 
TIGRFAM ID[TIGR01048] diaminopimelate decarboxylase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.199446 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.205657 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAAGCGG AGCGGACCGA GATCCAGCCA GGTGTCGGCG CGGGCGAGCC GCCCTGGTCG 
GCCGGCGTCG CCCGCCGTGC CACCGGAGAG CTCGAGGTCG CCGGCGTGCC GGTGAGCGAC
CTCGCCGGCC GCTTCGGCAC CCCCGTCTAC GTGCTGGACG AGGCGGATCT GCGCGCCCGT
GCCCGCGCGT ATCGCGACGC GTTCACCCGC GAGCTGGCGC CGTCGAGCGT CCACGTCTAC
TACGCGGGCA AGGCGTTCCT CTCGATCGCC GTCGCACGCT GGGTGCACGC CGAGGGCCTG
CGCATCGACA CGGCGACGGG CGGTGAGCTC GCCGTCGCCC TGCGGGCCGG GATCCCGGGC
GCCGACATCG GCATGCACGG CAACAACAAG TCGGACGCGG AGATCGACCG GGCGCTCGCG
GCGGGCGTGG GACGCATCGT GGTCGACTCC CTGCCGGAGG TCGCTCGCGT GGCCGACGCC
GCCGCGCGCC GCGGCGTGCG GGCTCCGGTC ATGGTCCGGG TCACCACGGG CGTCCACGCC
GGGGGGCACG AGTACATCTC CACGGCGCAC GAGGACCAGA AGTTCGGGCT GTCGATCGCG
GCCGGCCGGG CGGAGGAGGC GGTCGCCGCC GTGCTCGCTC GCCCGGAGCT CGAGCTGCTC
GGCCTGCACT CCCACATCGG TTCGCAGGTC CTCGAGGCGG AGGCGTTCAC CGTCGCCGCC
CGGTCCGTGC TCGAGCTGCG TGCGCGGATC GCCGAGACGC ACGGCGTGCT CGTGGGCGAG
GTGGACCTCG GCGGCGGGTA CGGCGTCGCC TACCTTCCCG GCGAGGTGCC GCTCGACCCG
GCGATGCTCG CCGCTGAGCT CGCCCGCACC GTCCGCGAGG TGTGCGCGGA GCTGGGCACC
GACGTTCCCG ACGTGTCGAT CGAGCCCGGC CGCGCGATCG TCGCTCCGGC CGGGTGCACG
CTCTACACGG TGGGGACCGT CAAGCCCGTG CGCGCGACGG ACGGGGCCGA CCGGCTGTAC
GTCTCCGTCG ACGGGGGCAT GAGCGACAGC ATCCGGCCCG CGCTCTACGG CGCGGCGTAC
ACGGCGACGA TCGCCTCCCG CGCCTCGGCG GCGCCGCCGG TGCGCTCGCG CGTCGTCGGC
AAGCACTGCG AGAGCGGTGA CATCGTGGTG CACGACGTCG ACCTGCCCGC CGACGTCGCG
GCCGGCGACC TGCTCGCCGT CCCGGCGACG GGCGCGTACG GCAGGTCCAT GGCCAGCCAG
TACAACCTCG TGCCGCGGCC CGGCGTCGTC GCCGTCGCCG GCGGCGAGGC CCGCGCCGTG
ATCCGGCGCG AGACCGAGGA GGACGTGCTC GCGCTCGACC TGGGCTGA
 
Protein sequence
MEAERTEIQP GVGAGEPPWS AGVARRATGE LEVAGVPVSD LAGRFGTPVY VLDEADLRAR 
ARAYRDAFTR ELAPSSVHVY YAGKAFLSIA VARWVHAEGL RIDTATGGEL AVALRAGIPG
ADIGMHGNNK SDAEIDRALA AGVGRIVVDS LPEVARVADA AARRGVRAPV MVRVTTGVHA
GGHEYISTAH EDQKFGLSIA AGRAEEAVAA VLARPELELL GLHSHIGSQV LEAEAFTVAA
RSVLELRARI AETHGVLVGE VDLGGGYGVA YLPGEVPLDP AMLAAELART VREVCAELGT
DVPDVSIEPG RAIVAPAGCT LYTVGTVKPV RATDGADRLY VSVDGGMSDS IRPALYGAAY
TATIASRASA APPVRSRVVG KHCESGDIVV HDVDLPADVA AGDLLAVPAT GAYGRSMASQ
YNLVPRPGVV AVAGGEARAV IRRETEEDVL ALDLG