Gene Bcav_0122 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBcav_0122 
Symbol 
ID7859287 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBeutenbergia cavernae DSM 12333 
KingdomBacteria 
Replicon accessionNC_012669 
Strand
Start bp127916 
End bp128590 
Gene Length675 bp 
Protein Length224 aa 
Translation table11 
GC content72% 
IMG OID643864199 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_002880149 
Protein GI229818623 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones43 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGGACAG CACTGGTGAC CGGCGGTGCA TCGGGCCTGG GGAGCGCCTG CGCCGAGCGG 
CTGACGGACG ACGGGCTGCG CGTCGTCACC GTCGACGTCG CGGCGGGCGC GGACCACGTG
CTCGACGTCT CCGACAGCGA CGCCGTCCGT GACCTCGCCG CTCGCCTCGG GCCGGTCGAC
GTCCTGGTCA ACAGCGCCGG CATCATCGGC GCCAACGTCC CGCTCGTGGA CGTGGCCGAC
GAGGACTGGC AGCGGGTCTT CGCCGTCAAC GTCTTCGGCA CGTTCGCCCT GTGCCGCGCG
TTCGCGCCGG GGATGGTCGA GCGCGGCTGG GGTCGCATCG TCAACGTCGC CAGCATGGCC
GGCAAGGACG GCAACCCGAA CCTCAGCGCC TACTCGGCGT CGAAGGCCGC CGTGATCGGT
CTGACCAAGT CGCTCGGCAA GGAGCTCGCC ACCACCGGCG TGCTCGTGAA CGCCGTCGCC
CCGGCCGTCA TCGACACTCC GATGAACGCG GCCACGGAGC CCGAGGTGCT CGAGCACCTG
CGCAGCCTCA TCCCGATGCG CCGGCTCGGG AGGCCCGAGG AGTTCGCGGC CCTCGTGTCG
TTCCTCGCCT CCGACGCCGT CAGCTTCTCC ACCGGCGCCG TGTACGACCT CAGCGGCGGC
CGCGCCACGT ACTGA
 
Protein sequence
MRTALVTGGA SGLGSACAER LTDDGLRVVT VDVAAGADHV LDVSDSDAVR DLAARLGPVD 
VLVNSAGIIG ANVPLVDVAD EDWQRVFAVN VFGTFALCRA FAPGMVERGW GRIVNVASMA
GKDGNPNLSA YSASKAAVIG LTKSLGKELA TTGVLVNAVA PAVIDTPMNA ATEPEVLEHL
RSLIPMRRLG RPEEFAALVS FLASDAVSFS TGAVYDLSGG RATY