| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcav_0002 |
|---|
| Symbol | |
|---|
| ID | 7858202 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Beutenbergia cavernae DSM 12333 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012669 |
|---|
| Strand | + |
|---|
| Start bp | 2331 |
|---|
| End bp | 3467 |
|---|
| Gene Length | 1137 bp |
|---|
| Protein Length | 378 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 643864077 |
|---|
| Product | DNA polymerase III, beta subunit |
|---|
| Protein accession | YP_002880030 |
|---|
| Protein GI | 229818504 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0592] DNA polymerase sliding clamp subunit (PCNA homolog) |
|---|
| TIGRFAM ID | [TIGR00663] DNA polymerase III, beta subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 46 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAAGTTCA GGGTTGACCG AGACGTCCTG GCCGACGCGG TGACGTGGAC CGCCCGGACG
TTGCCCACCC GGCCCTCCAT CCCGGTGCTC GCCGGCGTGC GGATCGAGGC AGATCCGCAG
GGCGCGCTCC GCTTGTCGAG CTTCGACTAC GAGGTCTCCG CGCTGTCGGA GATCGCGGCG
GACGTCCCCG ACGCCGGCAC GGTGCTCGTC TCCGGCCGGC TCCTCGCCGA GATCTCGCGG
GCGCTGCCCG GCAAGCCGGT GGACGTCGAG CTGGACGGCA CGCGGGTCGT GCTGACGTGC
GGGTCCAGCC GGTTCACGTT GCTGACGATG CCGCTCGACG ACTACCCGTC GCTGCCGGCG
ATGCCGCCGG CGTCCGGCAC CGTCGACGCC GGCACGCTGG CCGAGGCCGT GGCGCAGGTG
ACGATCGCCG CGAGCCGCGA CGAGACGCTC CCGCTGCTCA CGGGTGTGCG CGTGGAGATC
GAGGGCGACA AGCTCACGCT CCTCGCAACC GACCGGTACC GGCTCGCGAT GCGCGAACTT
TCCTGGAACC CGGCGTCCCC GGGCCTGGAG GCGACGGCGC TCGTGCGGGC ACGGACCCTC
TCCGAGGTCG CGAAGTCGCT CACGAGCGCC GGCGCGGTGA GCATCTCGCT GCCGAACGGC
GACGGCAAGG ATCTCGTCGG GTTCGAGGCC GGCGGCCGCC GGACGACGTC GCTGCTGGTC
GAGGGTGACT ACCCGCCCGT GCGGCGGCTG TTCCCGGAGG CCACGACGTC GCACGCCGTC
GCGTCCACCA ACGAGCTCGT CGAGGCGGCG CGGCGCGTGT CGCTCGTCGC CGAGCGCAAC
ACACCGATCC GCCTGACCTT CAGCGAGGGC CAGGTCGTGC TCGAGGCCGG CCAGGGTGAC
GACGCGCAGG CGTCCGAGGC CATCGAGTCG ACGCTGACCG GCGAGCCGAT CACGACGGCG
TTCAACCCCG GGTACCTGCT CGACGGGCTC GGCGTCGTGG GGACGGAGTT CACGCGCCTG
TCGTTCACGC ACGGCACGAA GCCGGCCGTG CTCACCGGGC AGCCGAAGCT CGAGGACGAC
GACGCCGACC GGGACGTGTT CCGCTACCTG ATCCAACCCA TCCGTTTCGC GAGCTGA
|
|---|
| Protein sequence | MKFRVDRDVL ADAVTWTART LPTRPSIPVL AGVRIEADPQ GALRLSSFDY EVSALSEIAA
DVPDAGTVLV SGRLLAEISR ALPGKPVDVE LDGTRVVLTC GSSRFTLLTM PLDDYPSLPA
MPPASGTVDA GTLAEAVAQV TIAASRDETL PLLTGVRVEI EGDKLTLLAT DRYRLAMREL
SWNPASPGLE ATALVRARTL SEVAKSLTSA GAVSISLPNG DGKDLVGFEA GGRRTTSLLV
EGDYPPVRRL FPEATTSHAV ASTNELVEAA RRVSLVAERN TPIRLTFSEG QVVLEAGQGD
DAQASEAIES TLTGEPITTA FNPGYLLDGL GVVGTEFTRL SFTHGTKPAV LTGQPKLEDD
DADRDVFRYL IQPIRFAS
|
|---|
| |