| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avin_50930 |
|---|
| Symbol | rnfE1 |
|---|
| ID | 7763941 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Azotobacter vinelandii DJ |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012560 |
|---|
| Strand | - |
|---|
| Start bp | 5162986 |
|---|
| End bp | 5163702 |
|---|
| Gene Length | 717 bp |
|---|
| Protein Length | 238 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 643807921 |
|---|
| Product | Electron transport complex, RnfABCDGE type, E subunit |
|---|
| Protein accession | YP_002802155 |
|---|
| Protein GI | 226947082 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG4660] Predicted NADH:ubiquinone oxidoreductase, subunit RnfE |
|---|
| TIGRFAM ID | [TIGR01948] electron transport complex, RnfABCDGE type, E subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.000773379 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTCATT GCGGAGCACC CAGCGTTCCC GAGCCCGAAA AGAAGGTGCC GTGGCAGTAC
TTCACCTCGG CCCTGTGGCA ATACAACGTC GCCCTGGTGC AGATGCTCGC GCTCTGCCCG
ACCCTGGCGG TGACCACCAC CGCCACCAAC GGCCTGGGCA TGGGCCTGGC CACCACCCTG
GTGCTGGTCA TGACCAACGC GCTCATCTCG TCGATGCGCC ATACCATTTC TCCCGAGGTG
CGCAACCCGG TGATGATCGG CGTGATCGCC GGCGTGGTGA CCCTGACCGA CATGGCGATG
AACGCCTGGA TGCACGAGCT GTACAAGGTG CTCGGCCTGT TCATCGCGCT GATCGTGACC
AACTGCGCGG TGCTCGGCCG TGCCGAGTCC TTCTGCCTGA GGAACCCGGT GATCCCCTCG
ATCCTAGACG GCGCCGGCAT GGGCGCCGGC TTCACCGCCG TACTGGTGGT GATCGGCGGC
ATCCGCGAGA TCCTCGGCAG CGGCACCCTG TTCTCCCAGG CGTCCTCGCT GCTCGGCTCG
CACTTCAAGT GGATGGAGAT CACCGTGATC CCCGACTTCC AGGGCATCCT GCTGGCCATC
CTGCCGCCGG GCGCCTTCAT CGTCCTGGGC TTCCTGCTGG CCGCCAAGCG GGTGATCGAT
CGCAAGCGTG CCGAGCGTCG CCAGCAGACC CATGGCGAGC TGGTGGTTCT GCAGTGA
|
|---|
| Protein sequence | MSHCGAPSVP EPEKKVPWQY FTSALWQYNV ALVQMLALCP TLAVTTTATN GLGMGLATTL
VLVMTNALIS SMRHTISPEV RNPVMIGVIA GVVTLTDMAM NAWMHELYKV LGLFIALIVT
NCAVLGRAES FCLRNPVIPS ILDGAGMGAG FTAVLVVIGG IREILGSGTL FSQASSLLGS
HFKWMEITVI PDFQGILLAI LPPGAFIVLG FLLAAKRVID RKRAERRQQT HGELVVLQ
|
|---|
| |