| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avin_47100 |
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| Symbol | vnfA3 |
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| ID | 7763573 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Azotobacter vinelandii DJ |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012560 |
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| Strand | - |
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| Start bp | 4779711 |
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| End bp | 4781264 |
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| Gene Length | 1554 bp |
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| Protein Length | 517 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 643807555 |
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| Product | sigma54-dependent activator protein |
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| Protein accession | YP_002801790 |
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| Protein GI | 226946717 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3604] Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains |
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| TIGRFAM ID | [TIGR01817] Nif-specific regulatory protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.536607 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAACCGC ATTCGGCGAA CGCGCGTCCC GGTCGGGAAC TGCCGGTCCA GGACAAGCCC
TGCGAATGGG ACATGGGTGA ATGCCGCACC GATCTGTTGC CGCTGCTCGG CGAACTGGGG
CGCATCTCCA GCGAGGGCAG CGACCTGGCC GGCATCCTGC GGGTGCTGCT GGAACTGATG
CAGCGCCATC TGAAGGTCGC GCGCGGCATG GTGACCCTGC GCGATCCGGA ATCGGGGCGG
ATCTTCGTCC AGCAGGGCTG CGGCCTGAGC GAGGAGGAGG AGGCCTCGGG CAGCCTCGCC
CACGGCGAGG ACATCGTCGC CCAAGTGGTG GACAGCGGGC GGACGGTGCT GCTGCCGGGC
GAGGCGGGCA GCCAGTCCTT CCTCTGCGTG CCGATCCGCC GCGACCGCAA GGTGCTGGGC
GCCATCGTCG CCGAGCGCCA CTACGCCAAC CGCCAGATGC TCGAGCTGGA CGCGGAGATT
CTCGCCATTC TCGCCGCCAC CACCGCCCAG GCGGTGGAGC TGCACCTGCA GGAGCACGTG
CGCAAGGTCG CCCTGGAGGA CGAGAACCGC CGCCTGCGCT CGGCCCTGCA GAGTCGCTTC
AAGCCCAGCA ACATCATCGG CAATTCGCGG CCGCTGCAGG AGGTCTACGG GTTGATCGAG
AAGGTCACCC GCTCGCGGAC CACGGTACTG ATCCTCGGCG AGAACGGCGT GGGCAAGGAA
CTGGTGGCCA GCGCCATCCA CTACAACAGC AGCAGCGCCG AGGGTCCCTT CGTCAAGTTC
AACTGCGCCG CCCTGCCGGA GAGCGTCATC GAGAGCGAGC TGTTCGGCCA CGAGCGCGGC
GCCTTCACCG GGGCGGCGAC CCAGCGGCGC GGGCGCTTCG AGGCGGCCGA CGGCGGGACC
ATCTTCCTCG ACGAGGTGGG CGAGCTGTCC CTGGCCATGC AGGCCAAGCT GCTGCGGGTG
CTGCAGGAGA AGAGCTTCGA ACGGGTCGGC GGCAACGTCA CCCACCAGGT CGACCTGCGC
ATCCTCGCCG CCACCAACCG CGACTTGCGG GCGATGGTGG AGCAGGGCCG CTTCCGCGAG
GATCTCTACT ACCGGCTCAA CGTCTTCCCC ATCACCGTGC CGCCGCTGCG CGAGCGCGGC
TCCGACGTCG CCACCCTGGC GGAGCATTTC GTCGCGCGCT TCTCCGGCGA GATGGGCGTC
ACAGTGGAGC GCATCTCCGC GCCGGCGATG AGCATGCTGA TGTGCTACCA CTGGCCGGGC
AACGTGCGCG AGCTGGAGAA CGTCATCGAG CGGGCGGTCA TCCTCTGCGA GGATGCGGTC
ATCGAACCGC ATCACCTGCC GCCTTCGCTG CAGACCCCGG CGGTTTCCGA GAGCCCGTCC
GCCGGCGGCA TTCTCGATGT CCGCCTGAGG CAGGCCGAGC ACGAGATGAT CGTCGAGGCG
CTCAAGCGGC ATAAGGGCAA CATGACCGAG GCCGCCACCC ATCTGGGTCT GACCCGGCGC
ATCCTCGGCC TGCGCATGGC CCGGCACAAC CTGAACTACA AGGATTTCCG CTGA
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| Protein sequence | MKPHSANARP GRELPVQDKP CEWDMGECRT DLLPLLGELG RISSEGSDLA GILRVLLELM
QRHLKVARGM VTLRDPESGR IFVQQGCGLS EEEEASGSLA HGEDIVAQVV DSGRTVLLPG
EAGSQSFLCV PIRRDRKVLG AIVAERHYAN RQMLELDAEI LAILAATTAQ AVELHLQEHV
RKVALEDENR RLRSALQSRF KPSNIIGNSR PLQEVYGLIE KVTRSRTTVL ILGENGVGKE
LVASAIHYNS SSAEGPFVKF NCAALPESVI ESELFGHERG AFTGAATQRR GRFEAADGGT
IFLDEVGELS LAMQAKLLRV LQEKSFERVG GNVTHQVDLR ILAATNRDLR AMVEQGRFRE
DLYYRLNVFP ITVPPLRERG SDVATLAEHF VARFSGEMGV TVERISAPAM SMLMCYHWPG
NVRELENVIE RAVILCEDAV IEPHHLPPSL QTPAVSESPS AGGILDVRLR QAEHEMIVEA
LKRHKGNMTE AATHLGLTRR ILGLRMARHN LNYKDFR
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