| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avin_43520 |
|---|
| Symbol | |
|---|
| ID | 7763225 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Azotobacter vinelandii DJ |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012560 |
|---|
| Strand | - |
|---|
| Start bp | 4397580 |
|---|
| End bp | 4398647 |
|---|
| Gene Length | 1068 bp |
|---|
| Protein Length | 355 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 643807207 |
|---|
| Product | amino acid ABC transporter-like protein |
|---|
| Protein accession | YP_002801448 |
|---|
| Protein GI | 226946375 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG4177] ABC-type branched-chain amino acid transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.00847282 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTCTATC GAGAAGCCGG CCAGTTCAGC AGCCGTTATG CCGACGACCG CCGGGTGTTC
CGCCTGCGCC AGGACCGCCT CGGCCTGGCC CTGCTGCTGG TCTTCGCCTT CGCCGTGGTG
CCCTGGCTGG GCAACGACTA CTGGTTCGGC GCCATCCTGA TTCCTTTCCT GGTGCTGTCG
CTGGCCGGGC TGGGGCTGAA CCTGCTGACC GGCTACGCCG GCCAGTTGTC CCTGGGCTCG
GCGGCGTTCA TGGCGGTGGG CGCCTTCGCC GCCTACAACT TCGAGCTGCG CGTGCCGGGC
CTGCCGCTGC CGGCCAGCCT GCTGCTCGGC GGGCTGGTCG CCGCGCTGGT GGCGCTGCTG
TTCGGCCTGC CGAGCCTGCG CATCAAGGGT TTCTACCTGA TCGTCTCGAC GCTGGCCGCG
CAGTTCTTCG TGCCGTGGGC GCTGACCCGC TTCGGCTGGT TCTCCAACTA CGATGCCTCC
GGGGTGATCA GCGCGCCGAA GCTGGAGATT TTCGGCATCG ACTTCGGCAC GCCGGCCGGA
CGCTACCTGC TGACCCTGGG CGTGGTGACG GCGCTGTTCT GGCTCGGCCA CAACCTGGTG
CGCAGCGAGC TGGGCCGCAA CTGGATGGCG GTGCGCGACA TGGACACCGC CGCCGCGGTG
ATCGGCATCC CGCTGTTGAA GACCAAACTG CTGGCCTTCG CCATCAGCGG CTTCTTCCTC
GGCGTCGCCG GCTCGCTGTG GGCCTTCGCC TATCTGGGCA CCGTGGAGCC GCACGGCTTC
GATCTCAACC GTTCGTTCCA GGTGCTGTTC ATCGTCATCA TCGGTGGGCT GGGCAGCATT
CTCGGCAACT TCCTCGGCGC GGCCTTCATG GTGCTGTTCC CGCTGCTGCT GTCGAACCTC
GCCGGCCTGC TGCCGGGCGG CCTGATCGAC GCCGGCCAAC TGGAAAACCT GCAGAAGATC
GTTTTCGGCG CGCTGATCGT CGTCTTCCTG ATCAAGGAGC CGGAAGGCCT CGCCCGCCTC
TGGCAGCGCC TGCGCGAGCG CGCGCGGATC TGGCCGCTGC GCCACTGA
|
|---|
| Protein sequence | MLYREAGQFS SRYADDRRVF RLRQDRLGLA LLLVFAFAVV PWLGNDYWFG AILIPFLVLS
LAGLGLNLLT GYAGQLSLGS AAFMAVGAFA AYNFELRVPG LPLPASLLLG GLVAALVALL
FGLPSLRIKG FYLIVSTLAA QFFVPWALTR FGWFSNYDAS GVISAPKLEI FGIDFGTPAG
RYLLTLGVVT ALFWLGHNLV RSELGRNWMA VRDMDTAAAV IGIPLLKTKL LAFAISGFFL
GVAGSLWAFA YLGTVEPHGF DLNRSFQVLF IVIIGGLGSI LGNFLGAAFM VLFPLLLSNL
AGLLPGGLID AGQLENLQKI VFGALIVVFL IKEPEGLARL WQRLRERARI WPLRH
|
|---|
| |