| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avin_42830 |
|---|
| Symbol | nusA |
|---|
| ID | 7763158 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Azotobacter vinelandii DJ |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012560 |
|---|
| Strand | - |
|---|
| Start bp | 4321851 |
|---|
| End bp | 4323332 |
|---|
| Gene Length | 1482 bp |
|---|
| Protein Length | 493 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 643807138 |
|---|
| Product | transcription elongation factor NusA |
|---|
| Protein accession | YP_002801381 |
|---|
| Protein GI | 226946308 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0195] Transcription elongation factor |
|---|
| TIGRFAM ID | [TIGR01953] transcription termination factor NusA
[TIGR01954] transcription termination factor NusA, C-terminal duplication |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAAAG AAGTACTGCT GGTAGTTGAG TCGGTGTCCA ATGAAAAGGG CGTTCCGGCT
GGTGTGATTT TCGAGGCCCT GGAACTGGCG CTGGCCACTG CCACCAAGAA GCGCTACGAG
GACGATGTCG ATCTGCGTGT GCAGATCAAC CGTCAAAGCG GCGCGTACGA CACTTTCCGT
CGCTGGACCG TCGTCGAGGA CGATTTGCTG GAGAATCCGG CTGCCGAACT GACGCTCGAC
GAGGCCCGTG AGCGCAAGCC TGACGTCAGG GTCGGGGATG TAATCGAGGA AAAGATCGAG
TCCATTGAGT TCGGTCGAAT TGCCGCGCAG ACTGCCAAAC AGGTGATCGT GCAGAAGGTG
CGGGAGGCCG AGCGCGCCCA GGTGGTGGAT GTCTACCGCG AACGTGTGGG GGAGATCATT
TCCGGCACTG TTAAAAAGGT GACCCGGGAC AATGTCATCG TCGATCTCGG CAACAATGCC
GAGGCGCTGC TGGCGAGGGA GGATATCATC CCTCGCGAGA CCTTCCGGGT CGGTGCGCGG
GTACGGGCTC TGCTGAAGGA GATTCGCCCG GAGAACCGCG GTCCGCAGTT GATCCTGTCG
CGTACCGCAC CGGGCATGCT CATCGAGTTG TTCCGCATCG AGGTGCCGGA AATCGCCGAA
GGGTTGATCG AGGTGAAGGC TGCTTCCCGT GATCCGGGGT CGCGCGCCAA GATCGCCGTG
CGTTCCAAGG ACAAACGTAT CGATCCGCAG GGAGCCTGCA TCGGCATGCG CGGTTCTCGT
GTGCAGGCCG TCTCCGGCGA GTTGGGGGGT GAGCGTGTCG ATATCGTGCT GTGGGACGAT
AATCCGGCCC AGTTCGTGAT CAACGCAATG GCACCGGCCG AGGTGGCGGC GATCATTGTC
GACGAGGACG CCCATGCGAT GGATGTCGCC GTGGCCGACG ACAACCTGGC CCAGGCCATC
GGCCGCGGCG GGCAGAATGT GCGGCTGGCC AGCCAACTGA CCGGCTGGAC CCTGAATGTG
ATGACCGAGG GCGATATCCA GGCCAAGCAA CGGGCCGAGA CGGGCGACAT CCTGCGCTCC
TTCGTCGAAG AGCTTGAGGT CGACGAGGAG CTGGCGCAGG TGCTGGTGGA GGAAGGCTTC
ACCAGCCTGG AAGAGATTGC CTATGTACCG ATGGAAGAAA TGCTCGCCAT CGATGGTTTC
GATGAGGAAA TCGTCAACGA GTTGCGCGCG CGCGCCAAGG ACCGCCTGCT GACCAAGGCT
ATTGCTACTG AAGAAAAGCT GGTGGAAGCC CATCCGGCCG AAGACCTGCT CTCGCTCGAG
GGTATGGACA AGGAGCTGGC GGTTGAGCTG GCGATGCGCG GGGTGATTAC CCGCGAAGAC
CTAGCCGAGC AGTCGATCGA CGACCTGCTC GACATCGACG GCATGGATGA AGAGCGTGCC
GGCAAGCTGA TCATGGCCGC CCGAGCCCAT TGGTTCGAGT AA
|
|---|
| Protein sequence | MSKEVLLVVE SVSNEKGVPA GVIFEALELA LATATKKRYE DDVDLRVQIN RQSGAYDTFR
RWTVVEDDLL ENPAAELTLD EARERKPDVR VGDVIEEKIE SIEFGRIAAQ TAKQVIVQKV
REAERAQVVD VYRERVGEII SGTVKKVTRD NVIVDLGNNA EALLAREDII PRETFRVGAR
VRALLKEIRP ENRGPQLILS RTAPGMLIEL FRIEVPEIAE GLIEVKAASR DPGSRAKIAV
RSKDKRIDPQ GACIGMRGSR VQAVSGELGG ERVDIVLWDD NPAQFVINAM APAEVAAIIV
DEDAHAMDVA VADDNLAQAI GRGGQNVRLA SQLTGWTLNV MTEGDIQAKQ RAETGDILRS
FVEELEVDEE LAQVLVEEGF TSLEEIAYVP MEEMLAIDGF DEEIVNELRA RAKDRLLTKA
IATEEKLVEA HPAEDLLSLE GMDKELAVEL AMRGVITRED LAEQSIDDLL DIDGMDEERA
GKLIMAARAH WFE
|
|---|
| |