| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avin_42800 |
|---|
| Symbol | truB |
|---|
| ID | 7763155 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Azotobacter vinelandii DJ |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012560 |
|---|
| Strand | - |
|---|
| Start bp | 4317910 |
|---|
| End bp | 4318827 |
|---|
| Gene Length | 918 bp |
|---|
| Protein Length | 305 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 643807135 |
|---|
| Product | tRNA pseudouridine synthase B |
|---|
| Protein accession | YP_002801378 |
|---|
| Protein GI | 226946305 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0130] Pseudouridine synthase |
|---|
| TIGRFAM ID | [TIGR00431] tRNA pseudouridine 55 synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGACCCAGG GTAAACGTAT CCGCCGCAAG GTCGACGGCA TCCTGGTCCT CGACAAGCCG
CATGGACTGA CCTCCAACGC CGCGTTGCAG AAGGTGCGCT GGCTTCTGAA CGCCGAGAAG
GCCGGGCATA CCGGTAGCCT CGACCCGTTG GCCACCGGTG TGCTGCCGCT GTGTTTCGGC
GAGGCGACCA AGTTTTCCCA GTACCTGCTG GATGCCGACA AGGGTTACGA GACCCTGATG
CATCTCGGCG TGACCACGAC TACCGGCGAC GCCGAGGGTG AGGTGCTCGA GCGACGTGCC
GTGCAGCTCG GGCGCGATGC GCTGGAGTCG GTACTGGCGG ATTTCCGCGG CGAGATCAGC
CAGGTCCCGC CCATGTATTC GGCACTCAAA CGTGACGGGC AGCCGCTCTA CAAGCTGGCC
AGGGCCGGCG AGGTGGTGGA GCGCGAGGCG CGTTCTGTTA CTATTGCGCG CCTGGAACTG
CTGGCCTTCG AGCCGCCGTT CGCACGGCTG GCGGTGGCTT GCAGCAAGGG CACCTATGTG
CGTTCCCTGG TCGAGGACAT CGGCCGGGCG CTCGGATTCG GAGCGCACGT CGCGGAGTTG
CGCAGGACCC AGGCCGGACC TTTCGGGCTG GCCCGGACGG TCAGCCTCGC GGCCCTTGAG
CAGGCCCATG CCGAAGGTGG CAGCGAGGCG CTCGACCCTT TCCTGCTGCC GGCGGACAGC
GGTCTGGAGC ATTGGCCGTT GCTGCAGCTC TCCGAGCACA GCAGCTACTA CTGGCTGCAC
GGGCAGCCGG TGCGTGCGCC GCAGTCGCCG AAGTTCGGCA TGGTGCGGGT GCAGGATCAT
ACGGGCCGCT TCATCGGTAT CGGTGAAGTG GGCGACGACG GGCGCATCGC GCCGCGTCGA
CTGATTCGGT CGGAATGA
|
|---|
| Protein sequence | MTQGKRIRRK VDGILVLDKP HGLTSNAALQ KVRWLLNAEK AGHTGSLDPL ATGVLPLCFG
EATKFSQYLL DADKGYETLM HLGVTTTTGD AEGEVLERRA VQLGRDALES VLADFRGEIS
QVPPMYSALK RDGQPLYKLA RAGEVVEREA RSVTIARLEL LAFEPPFARL AVACSKGTYV
RSLVEDIGRA LGFGAHVAEL RRTQAGPFGL ARTVSLAALE QAHAEGGSEA LDPFLLPADS
GLEHWPLLQL SEHSSYYWLH GQPVRAPQSP KFGMVRVQDH TGRFIGIGEV GDDGRIAPRR
LIRSE
|
|---|
| |