Gene Avin_40460 details

Gene Information

• Locus tag: Avin_40460
• Symbol: secD
• ID: 7762932
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Azotobacter vinelandii DJ
• Kingdom: Bacteria
• Replicon accession: NC_012560
• Strand: -
• Start bp: 4095688
• End bp: 4097556
• Gene Length: 1869 bp
• Protein Length: 622 aa
• Translation table: 11
• GC content: 65%
• IMG OID: 643806905
• Product: preprotein translocase subunit SecD
• Protein accession: YP_002801157
• Protein GI: 226946084
• COG category: [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG0342] Preprotein translocase subunit SecD
• TIGRFAM ID: [TIGR00916] protein-export membrane protein, SecD/SecF family; [TIGR01129] protein-export membrane protein SecD

Plasmid Coverage information

• Num covering plasmid clones: 28
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCTCAACA AGTATCCCCT GTGGAAGTAT CTGCTGATCC TGGCCGTGCT GCTGGTCGGC 
ATTGTCTATT CCGCACCCAA TCTCTTTCCC GACGACCCGG CCATCCAGAT CAGCGGGGCA 
AGCGCGGCCC GCCAGATCGG ACAGGGCGAT CTCGAGCATG TCGGCAAGGC GCTGGCCGAG 
GCCGGCATCG CCGTCAAGGC GAGCAGCCTG ACCGATGAAG GCAAGACCGG ACTGTTGCGT 
CTGGTCGACC AGGGACGCCA ACTGGAGGCC AAGGACGTGG CGCGCAAGGT GCTCGGCGAC 
GACTACGTGG TCGCGCTGAA CCTGGCGCCG ACCACGCCCG GCTGGCTGCG CGCCCTGGGC 
GCCAATCCGA TGAAACTGGG CCTGGACCTG TCCGGCGGCG TGCATTTCCT GCTCGAGGTG 
GACATGGACA AGGCGCTGGA TGCGCGTTTG AAGGTGTACG AGGGCGAGGT GAAGAGCCTG 
CTGCGCAAGG AGCGCCAGCG CTATCGCAGC CTGCCGCAGC AGGACGGTGC CATTCAGCTT 
GGCTTCGCCG ACAGCGGGCA ACTGGAGCAG GCACAGGCGT CGATACGCAA GAATTTCAGC 
GACTTCGATC TGAGTGCCGG CGAACGCAAT GGCCAGCCGG TGCTGCGCCT GACGCTGACG 
GCGGCGAAGC TGGCGGAGAT TCGCGAGTAC TCGATCAGGC AGAACCTGAC CACGGTGCGC 
AACCGGGTCA ACGAACTGGG CGTGTCCGAG CCGCTGGTGC AGCGCCAGGG CGCCAATCGC 
ATCGTCGTCG AATTGCCCGG CGTGCAGGAT ACCGCCGAGG CCAAGCGGAT TCTCGGCAAG 
ACCGCCAGCC TCGAGTTCCG TATGGCCGCC GAATCCGATG CTTCGCGCGC CATTACCGAG 
ACCTTCGAGT TTCGCGAGGG AGGGCGCCCG CCGGTGGCCT TGGAGCGCAG CCTGATCATC 
ACCGGTGATC AGGTCACCGA CGCCCAGGCC AGCTACGACG AGAACGGCCG TCCGCAGGTC 
AACATCCGTC TCGATGGCCA TGGCGGCGAA TTGATGAACC GGGCGACCCG CAACAGCGTC 
GGGCGCGCCA TGGCCGTGTT GTTCATCGAG CAGAAGCCGG TGACCCGCTA CGTCAAGCAG 
ACGATCGACG GCGTCGAGAA GGAGGTGGCG GTCGAAACCT TCCGGGAGGA GAAGAAGATC 
ATCAGCCTGG CGACCATCCA GTCGCCGCTC GGCAGCCAGT TCCGCATCAC CGGCCTCAAT 
GGCCAGGGCG AGTCCTCGGA GCTGGCGTTG CTGCTGCGTG CCGGTGGCCT GGCGGCGCCG 
ATGTACTTCG CCGAGGAGCG TACCCTGGGG CCGAGCCTGG GGGCGGAGAA CATCCAGTTG 
GGCATCCAGG CCTCGCTGTG GGGATTCCTC TTCGTCACCC TGTTCATGCT GCTGATCTAC 
AAGTTCTTCG GCCTGCTGGC CGCGGTGGCG CTGGCCTTCA ACATGGTGCT GCTGGTGGCG 
CTGATGTCGC TGCTCGGCGC GACCCTGACC CTGCCGGGCA TCGCCGGCAT AGTGTTGACC 
ATGGGCATGG CGGTGGATGC CAACGTGCTG ATCTTCTCGC GCATCCGCGA GGAAATCGCC 
AATGGCCTGT CGGTCCAGCG GGCCATCCAC GAAGGCTTCG ACCGTGCCTT CTCGGCGATT 
CTCGACGGCA ACCTGACCAC TCTGCTGGTG GGCGGAATCC TGTTCGCCAT GGGGACCGGG 
CCGGTCAAGG GCTTTGCCGT GACCATGTCG CTGGGGATCG TCACCTCCCT GTTCACCGCC 
ATCATCGTGA CCCGCGGCAT GGTCAACCTG ATCTACGGCG GCCGCGATCT GAAGAAACTG 
TGGATTTGA 

 

Protein sequence

MLNKYPLWKY LLILAVLLVG IVYSAPNLFP DDPAIQISGA SAARQIGQGD LEHVGKALAE 
AGIAVKASSL TDEGKTGLLR LVDQGRQLEA KDVARKVLGD DYVVALNLAP TTPGWLRALG 
ANPMKLGLDL SGGVHFLLEV DMDKALDARL KVYEGEVKSL LRKERQRYRS LPQQDGAIQL 
GFADSGQLEQ AQASIRKNFS DFDLSAGERN GQPVLRLTLT AAKLAEIREY SIRQNLTTVR 
NRVNELGVSE PLVQRQGANR IVVELPGVQD TAEAKRILGK TASLEFRMAA ESDASRAITE 
TFEFREGGRP PVALERSLII TGDQVTDAQA SYDENGRPQV NIRLDGHGGE LMNRATRNSV 
GRAMAVLFIE QKPVTRYVKQ TIDGVEKEVA VETFREEKKI ISLATIQSPL GSQFRITGLN 
GQGESSELAL LLRAGGLAAP MYFAEERTLG PSLGAENIQL GIQASLWGFL FVTLFMLLIY 
KFFGLLAAVA LAFNMVLLVA LMSLLGATLT LPGIAGIVLT MGMAVDANVL IFSRIREEIA 
NGLSVQRAIH EGFDRAFSAI LDGNLTTLLV GGILFAMGTG PVKGFAVTMS LGIVTSLFTA 
IIVTRGMVNL IYGGRDLKKL WI