Gene Avin_38730 details

Gene Information

• Locus tag: Avin_38730
• Symbol: ispF
• ID: 7762762
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Azotobacter vinelandii DJ
• Kingdom: Bacteria
• Replicon accession: NC_012560
• Strand: -
• Start bp: 3917549
• End bp: 3918022
• Gene Length: 474 bp
• Protein Length: 157 aa
• Translation table: 11
• GC content: 65%
• IMG OID: 643806736
• Product: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
• Protein accession: YP_002800988
• Protein GI: 226945915
• COG category: [I] Lipid transport and metabolism
• COG ID: [COG0245] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
• TIGRFAM ID: [TIGR00151] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase

Plasmid Coverage information

• Num covering plasmid clones: 21
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCGTATCG GACACGGCTA TGACGTGCAC CGTTTCGCCG AGGGTGATTT CGTCACTCTC 
GGCGGGGTGC GGATTCCTCA TCGTTTCGGG CTGCTCGCCC ATTCCGACGG CGACGTGCTG 
CTGCACGCGC TCTGCGACGC GCTGCTCGGC GCCGCGGCGC TGGGCGATAT CGGCCGGCAT 
TTCCCTGACA CCGATCCTCG CTTCAAGGGT GTCGACAGTC GCGTGCTGCT GCGCCATGTC 
GTGGCGCTGG TGCGGGAAAA GGGCTGGCGG GTCGGCAATG TCGACGCCAC CATAGTCGCG 
CAGGCGCCGA AAATGGCTCC GCATATCGAA CGCATGCGTC TGTCGATCGC CGAAGACCTG 
CAGGTCGGCG TGGAGCAGGT CAACGTCAAG GCCACCACCA CCGAAAAGCT CGGCTTCACC 
GGCCGCGAGG AAGGGATCGC CGTGCATGCG GTGGCCCTGT TGCTGGCGCT ATGA 

 

Protein sequence

MRIGHGYDVH RFAEGDFVTL GGVRIPHRFG LLAHSDGDVL LHALCDALLG AAALGDIGRH 
FPDTDPRFKG VDSRVLLRHV VALVREKGWR VGNVDATIVA QAPKMAPHIE RMRLSIAEDL 
QVGVEQVNVK ATTTEKLGFT GREEGIAVHA VALLLAL